View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_3 (Length: 567)
Name: NF15431_low_3
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 2267642 - 2268203
Alignment:
| Q |
1 |
ttgttctagtggctagtctctgatactcagttttaagacttgaatgagcaacttgttgctgctttttagaccaccatgaaaataaactagtttcaaagta |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2267642 |
ttgttccagtggctagtctctgatactcagttttaagacttgaatgagcaacttgttgctgctttttagaccaccatgaaaataaactagtttcaaagta |
2267741 |
T |
|
| Q |
101 |
tgtgctagaccctgaattagagcacctgtcatcagggttagatgcccaattggcatctcaaaatacctgtaaatgagatgactggtctggcagtaaaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2267742 |
tgtgctagaccctgaattagagcacctgtcatcagggttggatgcccaattggcatctcaaaatacctgtaaatgagatgactggtctggcagtaaaaga |
2267841 |
T |
|
| Q |
201 |
aggccatgatcagtggagcctttaagataccgccgaatgcgctttgataattttccaatgctcaatttgtggtcatgccataaataggcacatcgtagtt |
300 |
Q |
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| T |
2267842 |
aggccatgatcagtggagcctttaagataccgccgaacgcgctttgataattttccaatgctcaatttgtggtcatgccataaataggcacattgtagtt |
2267941 |
T |
|
| Q |
301 |
acacttaagttaatttcagttctggtgatagttgcatattgtaatagcctgcacctacaatagaatgacagggctgagtctaagccatgtaccgtaagag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2267942 |
acacttaagttaatttcagttctggtgatagttgcatattgtaatagcctgcacctacaatagaatgacagggctgagtctaagccatgcaccgtaagag |
2268041 |
T |
|
| Q |
401 |
ctgtagatgctggtttccactataatatctataactattcataattacccttgcataactattcttcacatttgctcttcggtaactagtaaaatttcta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2268042 |
ctgtagatgctggtttccactataatatctataactattcataattacccttgcataactattcttcacatttgctctttggtaactagtaaaatttcta |
2268141 |
T |
|
| Q |
501 |
taatgacattctaattgatagtaatgttgggaattaacttagatacttgatttcttctcact |
562 |
Q |
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| T |
2268142 |
taatgacattgtaattgatagtaatgttgggaattaacttagatacttgatttcttcacact |
2268203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 103 - 292
Target Start/End: Complemental strand, 650476 - 650285
Alignment:
| Q |
103 |
tgctagaccctgaattagagcacctgtcatcagggttagatgcccaattggcatctcaaaatacctgt-aaatgagatgactggtctggcagtaaaagaa |
201 |
Q |
| |
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||||||||||| || |||| |||||||||||||||| |||| ||||||||||||| |||||||||||| ||| || |||||| |||| | |||||||| |
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| T |
650476 |
tgctagaccctaaagtagatcacctgtcatcagggtcagattcccaattggcatcgcaaaatacctgtaaaacgatgtgactgatctgtcggtaaaagat |
650377 |
T |
|
| Q |
202 |
ggccatgatcagtggagcc-tttaagataccgccgaatgcgctttgataattttccaatgctcaatttgtggtcatgccataaataggcaca |
292 |
Q |
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||||||||||||| ||||| |||||||||| || ||||| || ||| |||||||| ||||||| || |||| |||||||||||| |||||| |
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| T |
650376 |
ggccatgatcagttgagccttttaagatactgcaaaatgcactctgacaattttcctatgctcatttagtggccatgccataaattggcaca |
650285 |
T |
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