View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_33 (Length: 274)
Name: NF15431_low_33
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 11621765 - 11622012
Alignment:
| Q |
19 |
caaggtgatgttgaaattagttttgatagtaactaattgcatactagacatctttaatacacaaattagaactatatttatactttagtacagaagtcaa |
118 |
Q |
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| T |
11621765 |
caaggtgatgttgaaattaattttgatagtaactaattgcatactagacatctttaatacacaaattagaactatattcatactttagtacagaagtcaa |
11621864 |
T |
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| Q |
119 |
ataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatttaattgataatattctctcg |
218 |
Q |
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| T |
11621865 |
ataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcagagatattaagaatacctaatttaattgataatattctctcg |
11621964 |
T |
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| Q |
219 |
gcagcaatcctaaaatactgagaattgctggtaatgaacacctatgct |
266 |
Q |
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| T |
11621965 |
gcagcaatcctaaaatactgagaattgctggtaatgaacacctatgct |
11622012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 262
Target Start/End: Original strand, 11640305 - 11640491
Alignment:
| Q |
78 |
cacaaattagaactatatttatactttagtacagaagtcaaataagtatacgaacatgtatataaacaaccttaggatctacggcatgttgatttatcag |
177 |
Q |
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| T |
11640305 |
cacaaattaaaactataatcatactttagtgtggaagtcaaataaatatatgaacatgcatatcaacaaccttaggatctacggcgtgttgatttatcaa |
11640404 |
T |
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| Q |
178 |
agata--ttaagaatacctaatttaattgataatattctctcggcagcaatcctaaaatactgagaattgctggtaatgaacaccta |
262 |
Q |
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| T |
11640405 |
agatattttaaaaatacctgatttcattgataatagtctctcaacagtactcctaaaattcagagagtcgctgataatgaacaccta |
11640491 |
T |
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