View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_34 (Length: 265)
Name: NF15431_low_34
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 27305456 - 27305689
Alignment:
| Q |
19 |
gtatcgcggtgatgagttattctataagtcgtttggatagattcttgttgtcataagattggtgtttgacttggtcaaactgtattcaggtggtacacat |
118 |
Q |
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| T |
27305456 |
gtatcacggtaatgagttattctataagtcgtttggatagattcttgttgttataagattggtgtttgacatggccaaactgtattcaagtggcacacat |
27305555 |
T |
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| Q |
119 |
tagagggttgacggaccacctcctgattacattatccgttgatgaggagaattgggaccctagaccatctcgaatgttgaaatgttgggccgatgttccg |
218 |
Q |
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| T |
27305556 |
tagagggttgtcagaccactgcctgattacgttattcgttgatgaggagaattggagccttaga-catctcaaatgttgaaatattgggccgatgttctg |
27305654 |
T |
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| Q |
219 |
gagtattaacaatttgttcaggagaaatgggattc |
253 |
Q |
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| T |
27305655 |
gggtataaacaatttgttcgggagaaatgggattc |
27305689 |
T |
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