View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_low_35 (Length: 260)

Name: NF15431_low_35
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_low_35
NF15431_low_35
[»] chr6 (8 HSPs)
chr6 (18-260)||(34820147-34820389)
chr6 (19-222)||(34820653-34820856)
chr6 (17-228)||(34820296-34820507)
chr6 (17-228)||(34820413-34820624)
chr6 (18-228)||(34820530-34820740)
chr6 (146-260)||(34819871-34819985)
chr6 (128-227)||(34820765-34820864)
chr6 (30-71)||(34819943-34819984)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 34820389 - 34820147
Alignment:
Q  18 aaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttcgaagttgtggttgaccatcaactcgcagacgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  34820389 aaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgcagacga 34820290  T
Q  118 caaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcagaggtgactttggaagctgaggttgac 217  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34820289 caaatcagacaaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgac 34820190  T
Q  218 catcaactcgctgaggcgtctcctttaaagaagaaagggaaga 260  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34820189 catcaactcgctgaggcgtctcctttaaagaagaaagggaaga 34820147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 34820856 - 34820653
Alignment:
Q  19 aaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttcgaagttgtggttgaccatcaactcgcagacggc 118  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||| | || |||||||||| |||||||  ||| ||||||| |||| ||||| |    
T  34820856 aaataatagtagttttgttgacgagagtatcacaaaaaatgatgttggtaaggcaaaggtggctttggaagttgaagttaaccatcagctcgtagacgac 34820757  T
Q  119 aaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcagaggtgactttggaagctgaggttgacc 218  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||||||| |||    
T  34820756 aaattagatgaagctgaaaataatagtagttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaacc 34820657  T
Q  219 atca 222  Q
    ||||    
T  34820656 atca 34820653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 34820507 - 34820296
Alignment:
Q  17 aaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttcgaagttgtggttgaccatcaactcgcagacg 116  Q
    |||||||||| | ||||||||||||||||| ||| |||||||||| ||||||| |||||||||| |||  |||||| |||||||||||| ||||| || |    
T  34820507 aaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgcggaag 34820408  T
Q  117 gcaaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcagaggtgactttggaagctgaggttga 216  Q
      |||||||| ||||||||| |||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||| ||||||||| || ||||||    
T  34820407 ataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttga 34820308  T
Q  217 ccatcaactcgc 228  Q
    ||||||||||||    
T  34820307 ccatcaactcgc 34820296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 34820624 - 34820413
Alignment:
Q  17 aaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttcgaagttgtggttgaccatcaactcgcagacg 116  Q
    |||||||||||| ||||||||||||| |||||||| |||| |||| | |||| ||| ||||||| ||| ||||||| | |||||||||| ||||||||||    
T  34820624 aaaaataatagtagttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgcagacg 34820525  T
Q  117 gcaaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcagaggtgactttggaagctgaggttga 216  Q
     ||||||||| |||||| || |||||| ||||||||||||||||||  ||| ||||||| |||||||||| |||||||||  |||| ||| |||||||||    
T  34820524 acaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttga 34820425  T
Q  217 ccatcaactcgc 228  Q
    |||||| |||||    
T  34820424 ccatcagctcgc 34820413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 34820740 - 34820530
Alignment:
Q  18 aaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttcgaagttgtggttgaccatcaactcgcagacgg 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |||| ||||||| || | ||| |     
T  34820740 aaaataatagtagttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatcagcttgtagatga 34820641  T
Q  118 caaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcagaggtgactttggaagctgaggttgac 217  Q
    ||| | ||| |||||| || |||||||||||||||||||||| || ||||| |||| | |||| |||| ||| ||||||  |||||||| |||| |||||    
T  34820640 caacttagatgaagctaaaaataatagtagttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgac 34820541  T
Q  218 catcaactcgc 228  Q
    ||||| |||||    
T  34820540 catcagctcgc 34820530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 34819985 - 34819871
Alignment:
Q  146 agttttgttgacgagagcatcacaaaaaataatgttggtacgtcagaggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaa 245  Q
    ||||||||||||||||| ||||| |||||| ||| ||||||||  | ||||  |||| ||||| || ||||||||||||||| |||||| | ||||||||    
T  34819985 agttttgttgacgagagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaa 34819886  T
Q  246 agaagaaagggaaga 260  Q
    |||||||||||||||    
T  34819885 agaagaaagggaaga 34819871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 34820864 - 34820765
Alignment:
Q  128 gaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcagaggtgactttggaagctgaggttgaccatcaactcg 227  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||| | || ||||| ||||||||| ||| ||| ||||||| ||||    
T  34820864 gaagctggaaataatagtagttttgttgacgagagtatcacaaaaaatgatgttggtaaggcaaaggtggctttggaagttgaagttaaccatcagctcg 34820765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 34819984 - 34819943
Alignment:
Q  30 gttttgttgacgagagtatcacaaaaaatgattttggtacgt 71  Q
    |||||||||||||||||||||| |||||||||  ||||||||    
T  34819984 gttttgttgacgagagtatcaccaaaaatgatgatggtacgt 34819943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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