View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_low_37 (Length: 258)

Name: NF15431_low_37
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_low_37
NF15431_low_37
[»] chr3 (8 HSPs)
chr3 (1-208)||(5454381-5454588)
chr3 (1-208)||(5445798-5446006)
chr3 (1-183)||(5489570-5489752)
chr3 (1-154)||(5502419-5502572)
chr3 (17-115)||(5525284-5525382)
chr3 (17-115)||(5484159-5484257)
chr3 (17-190)||(5849380-5849552)
chr3 (1-56)||(20343124-20343179)
[»] chr6 (3 HSPs)
chr6 (1-208)||(25809806-25810014)
chr6 (209-251)||(26452312-26452354)
chr6 (208-251)||(26446499-26446542)
[»] chr8 (4 HSPs)
chr8 (207-251)||(24750110-24750154)
chr8 (208-251)||(24744388-24744431)
chr8 (209-251)||(43579675-43579717)
chr8 (209-251)||(43583593-43583635)
[»] chr5 (2 HSPs)
chr5 (209-251)||(21006135-21006177)
chr5 (209-251)||(21011887-21011929)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 5454381 - 5454588
Alignment:
Q  1 ttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5454381 ttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaacttca 5454480  T
Q  101 gagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttaccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5454481 gagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttttcataacttttggcttaccaa 5454580  T
Q  201 tcttcttt 208  Q
    ||||||||    
T  5454581 tcttcttt 5454588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 5445798 - 5446006
Alignment:
Q  1 ttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgtt-aaaaaagtaaaggaacacatcaatcaaagttc 99  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||    
T  5445798 ttcttgtgcttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacacatcactcaaacttc 5445897  T
Q  100 agagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttacca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  5445898 agagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaattataaatatttgagatttacttgtcataacttttggcttacca 5445997  T
Q  200 atcttcttt 208  Q
    | |||||||    
T  5445998 agcttcttt 5446006  T

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Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5489570 - 5489752
Alignment:
Q  1 ttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  5489570 ttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggttgaatgttaagaaagtaaaggaacacatcaatcaaacttca 5489669  T
Q  101 gagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcat 183  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||||||||    
T  5489670 gagttcattgtaatttgtaactaattctgtttgcatcactatttgagtaagtatatcataaatatttgagatttacttgtcat 5489752  T

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Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 5502419 - 5502572
Alignment:
Q  1 ttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||| |||||||  ||||||||| |||||| || |    
T  5502419 ttcttgtgcttccagagaaataacttttttatataccctgaagtaacagtttatgttgtttaatgttaagaaagtaacagaacacatctatcaaacttta 5502518  T
Q  101 gagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaa 154  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  5502519 gagttcattgtaatttgtaactaattctgtttgcagcgctatttgagtaagtaa 5502572  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 5525284 - 5525382
Alignment:
Q  17 gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagt 115  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| || |||||||||| ||| | |||||||| |||||||||||||||||||    
T  5525284 gaaataactttttaatataccctgaagtaacaatttaagtggtttaatgtcaacaaagtaaagggacaaagcaatcaaatttcagagttcattgtaagt 5525382  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 5484159 - 5484257
Alignment:
Q  17 gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagt 115  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||| | |||||||| | |||||||||||||||||    
T  5484159 gaaataactttcttatataccctgaagtaataatttaagtggtttaatgtaaaaaaagtatagggacaaagcaatcaaactccagagttcattgtaagt 5484257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 5849552 - 5849380
Alignment:
Q  17 gaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacacatcaatcaaagttcagagttcattgtaagtt 116  Q
    |||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||  ||| |||||  ||| ||   | |||||||||||||    
T  5849552 gaaataacttttttatataacctgaagtaacaatttaagtggttcaatgttaacaaagtaaagtgacaaatcaacgaaactttgaaattcattgtaagtt 5849453  T
Q  117 gtaac---taattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataactttt 190  Q
    |||||   ||| |||  ||  || ||||||    ||| |||||||||||||||||| ||||| || |||||||||||    
T  5849452 gtaacatttaactctactttgagtactatt----taattaaatcaaaaatatttgacatttaattatcataactttt 5849380  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20343124 - 20343179
Alignment:
Q  1 ttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagt 56  Q
    ||||| ||||||||| |||||||||| |||||||  ||||||||||||||| ||||    
T  20343124 ttcttctgcttccagtgaaataacttttttatatggcctgaagtaacaattaaagt 20343179  T

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Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 25810014 - 25809806
Alignment:
Q  1 ttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgtt-aaaaaagtaaaggaacacatcaatcaaagttc 99  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||    
T  25810014 ttcttgtgcttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacacatcactcaaacttc 25809915  T
Q  100 agagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaatcaaaaatatttgaaatttacttgtcataacttttggcttacca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  25809914 agagttcattgtaagttgtaactaattctgtttgcagcactatttgagtaagtaaattataaatatttgagatttacttgtcataacttttggcttacca 25809815  T
Q  200 atcttcttt 208  Q
    | |||||||    
T  25809814 agcttcttt 25809806  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 26452354 - 26452312
Alignment:
Q  209 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26452354 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 26452312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 26446499 - 26446542
Alignment:
Q  208 tggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  26446499 tggcttaatgcatacgcatgtcccttaacttattttttcttctc 26446542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 24750154 - 24750110
Alignment:
Q  207 ttggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  24750154 ttggcttaatgcatacgcaagtcccttaacttattttttcttctc 24750110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 24744388 - 24744431
Alignment:
Q  208 tggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  24744388 tggcttaatgcatacggaggtcccttaacttattttttcttctc 24744431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 43579675 - 43579717
Alignment:
Q  209 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    |||||||| |||||||| ||| |||||||||||||||||||||    
T  43579675 ggcttaatacatacgcaagtctcttaacttattttttcttctc 43579717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 43583635 - 43583593
Alignment:
Q  209 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    |||||||| |||||||| ||||||||| |||||||||||||||    
T  43583635 ggcttaatacatacgcatgtcccttaatttattttttcttctc 43583593  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 21006135 - 21006177
Alignment:
Q  209 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21006135 ggcttaatacatacgcaggtcccttaacttattttttcttctc 21006177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 21011929 - 21011887
Alignment:
Q  209 ggcttaatgcatacgcaggtcccttaacttattttttcttctc 251  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21011929 ggcttaatacatacgcaggtcccttaacttattttttcttctc 21011887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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