View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_low_39 (Length: 242)

Name: NF15431_low_39
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_low_39
NF15431_low_39
[»] chr5 (7 HSPs)
chr5 (1-228)||(39675977-39676204)
chr5 (90-228)||(10866502-10866640)
chr5 (90-228)||(10873665-10873803)
chr5 (90-228)||(10878736-10878874)
chr5 (90-228)||(10883807-10883945)
chr5 (90-224)||(10887729-10887863)
chr5 (106-228)||(10046138-10046260)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 39675977 - 39676204
Alignment:
Q  1 cttcattacgatgaagaagaagatgaagttgctgacattgctgcgaaaaccaccaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675977 cttcattacgatgaagaagaagatgaagttgctgacattgctgcgaaaaccaccaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagttt 39676076  T
Q  101 tgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676077 tgtccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgt 39676176  T
Q  201 gattaggaaccaagctgtggagagagtt 228  Q
    ||||||||||||||||||||||||||||    
T  39676177 gattaggaaccaagctgtggagagagtt 39676204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 10866502 - 10866640
Alignment:
Q  90 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 189  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10866502 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10866601  T
Q  190 cgtgctgctgtgattaggaaccaagctgtggagagagtt 228  Q
    ||||| ||    |||||||||||||| ||||||||||||    
T  10866602 cgtgcagcaaatattaggaaccaagcggtggagagagtt 10866640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 10873803 - 10873665
Alignment:
Q  90 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 189  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10873803 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10873704  T
Q  190 cgtgctgctgtgattaggaaccaagctgtggagagagtt 228  Q
    ||||| ||    |||||||||||||| ||||||||||||    
T  10873703 cgtgcagcaaatattaggaaccaagccgtggagagagtt 10873665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 10878874 - 10878736
Alignment:
Q  90 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 189  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10878874 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10878775  T
Q  190 cgtgctgctgtgattaggaaccaagctgtggagagagtt 228  Q
    ||||| ||    |||||||||||||| ||||||||||||    
T  10878774 cgtgcagcaaatattaggaaccaagccgtggagagagtt 10878736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 90 - 228
Target Start/End: Complemental strand, 10883945 - 10883807
Alignment:
Q  90 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 189  Q
    |||||||||| |||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10883945 ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga 10883846  T
Q  190 cgtgctgctgtgattaggaaccaagctgtggagagagtt 228  Q
    ||||| ||    |||||||||||||| ||||||||||||    
T  10883845 cgtgcagcaaatattaggaaccaagccgtggagagagtt 10883807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 10887863 - 10887729
Alignment:
Q  90 ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga 189  Q
    |||||||||| |||| |||||||| || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| |||||||| |||||||||||     
T  10887863 ccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagattgccgt 10887764  T
Q  190 cgtgctgctgtgattaggaaccaagctgtggagag 224  Q
    ||||| ||   ||||||||||||||| ||||||||    
T  10887763 cgtgcagcaaagattaggaaccaagcagtggagag 10887729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 10046138 - 10046260
Alignment:
Q  106 atggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgatta 205  Q
    ||||||||||| ||||||||  |||| |||||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| || | |||      
T  10046138 atggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatac 10046237  T
Q  206 ggaaccaagctgtggagagagtt 228  Q
    | |||||||| ||||||||||||    
T  10046238 gtaaccaagcggtggagagagtt 10046260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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