View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15431_low_4 (Length: 527)
Name: NF15431_low_4
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 34820182 - 34819671
Alignment:
| Q |
1 |
tcgctgaggcatgttctttaaagaagaaagggaagagtgataaaggcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttgagaa |
100 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
34820182 |
tcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctgagaa |
34820083 |
T |
|
| Q |
101 |
aagagttagctgccaagaacataaaggaacgagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||| |
|
|
| T |
34820082 |
aagagttagctgccaagaacataaaggaatgagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagt |
34819983 |
T |
|
| Q |
201 |
tttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaaga |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34819982 |
tttgttgacgagagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaaaga |
34819883 |
T |
|
| Q |
301 |
agaaagggaagagttatgaaggcgaggccaacaagaagaaggtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcg |
400 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34819882 |
agaaagggaagagtgataaaggcgaggccaacaagaagaatgtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacaggaacttcgatcg |
34819783 |
T |
|
| Q |
401 |
tgctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34819782 |
tgctggcttcgtgaaggatcatttcaacctttatgaagattttgaggcaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttgt |
34819683 |
T |
|
| Q |
501 |
ttgcgctctgtg |
512 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34819682 |
ttgcgctctgtg |
34819671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 198 - 340
Target Start/End: Complemental strand, 34820261 - 34820119
Alignment:
| Q |
198 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaa |
297 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| ||||||||| || ||||| |||| ||||| || |||||||||||||||||||||| | |||||||| |
|
|
| T |
34820261 |
agttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaa |
34820162 |
T |
|
| Q |
298 |
agaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
340 |
Q |
| |
|
||||||||||||||||| || |||||||| | | ||||||||| |
|
|
| T |
34820161 |
agaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 34820612 - 34820530
Alignment:
| Q |
198 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
280 |
Q |
| |
|
|||||| ||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||| | || |||||||||| ||||| |
|
|
| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgc |
34820530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 34820377 - 34820296
Alignment:
| Q |
199 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
280 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||| | | |||||||||||||||| |
|
|
| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgc |
34820296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
| Q |
198 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
274 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||||| || || ||||||| |
|
|
| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca |
34820653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 34835165 - 34835101
Alignment:
| Q |
74 |
tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa |
138 |
Q |
| |
|
||||||||||||| | || || |||||||||||||| || || ||||||||||||| |||||||| |
|
|
| T |
34835165 |
tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa |
34835101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
198 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
237 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 34820495 - 34820413
Alignment:
| Q |
198 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
280 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||| | |||||||||||| ||| | || |||||||||| ||||| |
|
|
| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgc |
34820413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 22080743 - 22080680
Alignment:
| Q |
403 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatca |
466 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| | | | |||||||||||||| |
|
|
| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatca |
22080680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University