View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_low_40 (Length: 237)

Name: NF15431_low_40
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_low_40
NF15431_low_40
[»] scaffold0140 (1 HSPs)
scaffold0140 (164-217)||(35481-35534)
[»] chr1 (8 HSPs)
chr1 (159-217)||(46652788-46652846)
chr1 (165-217)||(52947347-52947399)
chr1 (160-206)||(36145339-36145385)
chr1 (161-195)||(45915503-45915537)
chr1 (171-217)||(46651367-46651413)
chr1 (162-195)||(28649680-28649713)
chr1 (163-195)||(4062560-4062592)
chr1 (167-195)||(10771355-10771383)
[»] chr5 (7 HSPs)
chr5 (164-217)||(42776825-42776878)
chr5 (163-195)||(30381603-30381635)
chr5 (164-195)||(35988854-35988885)
chr5 (165-220)||(42775420-42775475)
chr5 (161-195)||(31024354-31024388)
chr5 (162-195)||(4285157-4285190)
chr5 (163-195)||(15795752-15795784)
[»] chr7 (13 HSPs)
chr7 (161-217)||(28848554-28848610)
chr7 (162-217)||(43546737-43546792)
chr7 (163-217)||(43545340-43545394)
chr7 (164-217)||(25008091-25008144)
chr7 (155-195)||(3843259-3843299)
chr7 (164-195)||(23966314-23966345)
chr7 (164-195)||(26776309-26776340)
chr7 (165-195)||(4706634-4706664)
chr7 (165-195)||(4707497-4707527)
chr7 (161-195)||(21914667-21914701)
chr7 (164-217)||(25009492-25009545)
chr7 (164-217)||(28849975-28850028)
chr7 (163-195)||(20016778-20016810)
[»] chr6 (8 HSPs)
chr6 (155-195)||(24051245-24051285)
chr6 (155-195)||(9699185-9699225)
chr6 (164-195)||(6159753-6159784)
chr6 (164-195)||(28302193-28302224)
chr6 (164-195)||(28509849-28509880)
chr6 (165-195)||(29979254-29979284)
chr6 (166-195)||(24052024-24052053)
chr6 (163-195)||(22352959-22352991)
[»] chr3 (10 HSPs)
chr3 (164-220)||(8391400-8391456)
chr3 (171-217)||(8392810-8392856)
chr3 (159-195)||(3990874-3990910)
chr3 (164-220)||(45981406-45981462)
chr3 (156-195)||(25165890-25165929)
chr3 (164-195)||(25166775-25166806)
chr3 (165-195)||(20289619-20289649)
chr3 (161-210)||(45982813-45982862)
chr3 (159-195)||(26052205-26052241)
chr3 (164-196)||(52935685-52935717)
[»] scaffold0141 (1 HSPs)
scaffold0141 (161-195)||(10302-10336)
[»] chr4 (9 HSPs)
chr4 (163-217)||(39927931-39927985)
chr4 (161-195)||(52477641-52477675)
chr4 (163-207)||(55947358-55947402)
chr4 (164-195)||(15807655-15807686)
chr4 (162-192)||(47848238-47848268)
chr4 (165-195)||(47864489-47864519)
chr4 (164-217)||(39929361-39929414)
chr4 (163-195)||(47848856-47848888)
chr4 (167-195)||(52502407-52502435)
[»] scaffold0369 (1 HSPs)
scaffold0369 (164-217)||(8277-8330)
[»] chr2 (11 HSPs)
chr2 (160-217)||(20587034-20587091)
chr2 (163-195)||(28917134-28917166)
chr2 (157-195)||(2237973-2238012)
chr2 (164-195)||(2238851-2238882)
chr2 (165-216)||(20588467-20588518)
chr2 (164-195)||(21716439-21716470)
chr2 (164-195)||(21720227-21720258)
chr2 (156-195)||(24559581-24559620)
chr2 (152-195)||(29090877-29090920)
chr2 (153-195)||(3149907-3149949)
chr2 (165-195)||(28916285-28916315)
[»] chr8 (7 HSPs)
chr8 (156-195)||(1939441-1939480)
chr8 (164-195)||(23154338-23154369)
chr8 (165-195)||(11761038-11761068)
chr8 (165-195)||(23153548-23153578)
chr8 (165-195)||(26635510-26635540)
chr8 (163-195)||(9122721-9122753)
chr8 (167-195)||(37586724-37586752)
[»] scaffold0765 (1 HSPs)
scaffold0765 (165-195)||(386-416)
[»] scaffold0524 (2 HSPs)
scaffold0524 (163-217)||(9076-9130)
scaffold0524 (168-217)||(7701-7750)
[»] scaffold0518 (1 HSPs)
scaffold0518 (155-195)||(1070-1110)
[»] scaffold0472 (1 HSPs)
scaffold0472 (164-220)||(9019-9075)
[»] scaffold0018 (1 HSPs)
scaffold0018 (165-217)||(193591-193643)


Alignment Details
Target: scaffold0140 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 35481 - 35534
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  35481 aggcttaaatatgcaaaccgtccctgtaatttcgcgcatttttgcaattcgtcc 35534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 46652846 - 46652788
Alignment:
Q  159 tatttaggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||    
T  46652846 tatttaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 46652788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 52947347 - 52947399
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||||||||||||||||| |||||||||  || |||||||||||||||||    
T  52947347 ggcttaaatatgcaaaccgtctctgtaattttgcgcatttttgcaattcgtcc 52947399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 36145339 - 36145385
Alignment:
Q  160 atttaggcttaaatatgcaaaccgtccctgtaatttcacgtattttt 206  Q
    ||||||||||||||||| ||| ||||||||||||||  |||||||||    
T  36145339 atttaggcttaaatatgtaaatcgtccctgtaatttggcgtattttt 36145385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 45915503 - 45915537
Alignment:
Q  161 tttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||| |||||||||||||||    
T  45915503 tttaggcttaaatatgcaatccgtccctgtaattt 45915537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 46651367 - 46651413
Alignment:
Q  171 aatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  46651367 aatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 46651413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 28649680 - 28649713
Alignment:
Q  162 ttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||| |||||||||||||||    
T  28649680 ttaggcttaaatatgcaatccgtccctgtaattt 28649713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 4062592 - 4062560
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||| |||||||||||||||    
T  4062592 taggcttaaatatgcaatccgtccctgtaattt 4062560  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 10771355 - 10771383
Alignment:
Q  167 cttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||    
T  10771355 cttaaatatgcaaaccgtccctgtaattt 10771383  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 42776878 - 42776825
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  42776878 aggctttaatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtcc 42776825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 30381635 - 30381603
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||||    
T  30381635 taggcttaaatatgcaaaccgtccctgtaattt 30381603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 35988854 - 35988885
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  35988854 aggcttaaatatgcaaaccgtccctgtaattt 35988885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 42775420 - 42775475
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtccttg 220  Q
    |||||||||||| ||| ||| ||||||||||| ||| ||||||||| |||||||||    
T  42775420 ggcttaaatatgtaaaacgttcctgtaatttcgcgtgtttttgcaaatcgtccttg 42775475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 31024388 - 31024354
Alignment:
Q  161 tttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||| ||||||||||||||||||||||||||||    
T  31024388 tttaggattaaatatgcaaaccgtccctgtaattt 31024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 4285157 - 4285190
Alignment:
Q  162 ttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||| |||||||||||||    
T  4285157 ttaggcttaaatatgcaaactgtccctgtaattt 4285190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 15795784 - 15795752
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||| |||||||||||||    
T  15795784 taggcttaaatatgcaaactgtccctgtaattt 15795752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 28848554 - 28848610
Alignment:
Q  161 tttaggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||    
T  28848554 tttaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 28848610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 43546792 - 43546737
Alignment:
Q  162 ttaggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||    
T  43546792 ttaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 43546737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 43545340 - 43545394
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  43545340 taggctttaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 43545394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 25008091 - 25008144
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||    
T  25008091 aggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 25008144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 3843299 - 3843259
Alignment:
Q  155 attttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  3843299 attttattttggcttaaatatgcaaaccgtctctgtaattt 3843259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 23966314 - 23966345
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  23966314 aggcttaaatatgcaaaccgtccctgtaattt 23966345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 26776309 - 26776340
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  26776309 aggcttaaatatgcaaaccgtccctgtaattt 26776340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 4706634 - 4706664
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  4706634 ggcttaaatatgcaaaccgtccctgtaattt 4706664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 4707527 - 4707497
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  4707527 ggcttaaatatgcaaaccgtccctgtaattt 4707497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 21914701 - 21914667
Alignment:
Q  161 tttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||| ||||||||||||||||||||||||    
T  21914701 tttaggcttacatatgcaaaccgtccctgtaattt 21914667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 25009545 - 25009492
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||| |||||| ||| ||||||||||||||| ||| ||||||||| ||||||    
T  25009545 aggctttaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 25009492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 28850028 - 28849975
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||| |||||||||| ||||||||||| ||| ||| ||||||||| ||||||    
T  28850028 aggctttaatatgcaaaacgtccctgtaacttcgcgtgtttttgcaaatcgtcc 28849975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 20016810 - 20016778
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||| |||||||||||||    
T  20016810 taggcttaaatatgcaaactgtccctgtaattt 20016778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 24051245 - 24051285
Alignment:
Q  155 attttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  24051245 attttttttaggcttaaatatgcaaaccgtccctgtaattt 24051285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 9699225 - 9699185
Alignment:
Q  155 attttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  9699225 atttaatttaggtttaaatatgcaaaccgtccctgtaattt 9699185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 6159753 - 6159784
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  6159753 aggcttaaatatgcaaaccgtccctgtaattt 6159784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 28302224 - 28302193
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  28302224 aggcttaaatatgcaaaccgtccctgtaattt 28302193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 28509849 - 28509880
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  28509849 aggcttaaatatgcaaaccgtccctgtaattt 28509880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 29979284 - 29979254
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  29979284 ggcttaaatatgcaaaccgtccctgtaattt 29979254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 24052053 - 24052024
Alignment:
Q  166 gcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||    
T  24052053 gcttaaatatgcaaaccgtccctgtaattt 24052024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 22352959 - 22352991
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||| ||||||    
T  22352959 taggcttaaatatgcaaaccgtccctataattt 22352991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 8391400 - 8391456
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtccttg 220  Q
    ||||||||||||| ||| ||||||||||||||| ||| ||||||||| |||||||||    
T  8391400 aggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccttg 8391456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 8392856 - 8392810
Alignment:
Q  171 aatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  8392856 aatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtcc 8392810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 3990910 - 3990874
Alignment:
Q  159 tatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||| ||||||||||||||||||||||||||||    
T  3990910 tatttaggtttaaatatgcaaaccgtccctgtaattt 3990874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 45981406 - 45981462
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtccttg 220  Q
    ||||||||||||| ||| ||||| ||||||||| ||| ||||||||| |||||||||    
T  45981406 aggcttaaatatgtaaaacgtccttgtaatttcgcgtgtttttgcaaatcgtccttg 45981462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 25165890 - 25165929
Alignment:
Q  156 ttttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  25165890 ttttctttcggcttaaatatgcaaaccgtccctgtaattt 25165929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 25166806 - 25166775
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  25166806 aggcttaaatatgcaaaccgtccctgtaattt 25166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 20289649 - 20289619
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  20289649 ggcttaaatatgcaaaccgtccctgtaattt 20289619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 45982862 - 45982813
Alignment:
Q  161 tttaggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaa 210  Q
    ||||||||| |||||||||| ||||||||||||||| | | |||||||||    
T  45982862 tttaggctttaatatgcaaatcgtccctgtaatttcgcatgtttttgcaa 45982813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 26052241 - 26052205
Alignment:
Q  159 tatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||| || ||||||||||||||||||||||||||||    
T  26052241 tattttggtttaaatatgcaaaccgtccctgtaattt 26052205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 52935685 - 52935717
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttc 196  Q
    |||||||||||||||| ||||||||||||||||    
T  52935685 aggcttaaatatgcaatccgtccctgtaatttc 52935717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 10302 - 10336
Alignment:
Q  161 tttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||||||    
T  10302 tttaggcttaaatatgcaaaccgtccctgtaattt 10336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 39927931 - 39927985
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  39927931 taggctttaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 39927985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 52477641 - 52477675
Alignment:
Q  161 tttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||||||    
T  52477641 tttaggcttaaatatgcaaaccgtccctgtaattt 52477675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 55947358 - 55947402
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaatttcacgtatttttg 207  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||    
T  55947358 taggcttaaatatgtaaatcgtccctgtaatttgacgtatttttg 55947402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 15807655 - 15807686
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  15807655 aggcttaaatatgcaaaccgtccctgtaattt 15807686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 192
Target Start/End: Original strand, 47848238 - 47848268
Alignment:
Q  162 ttaggcttaaatatgcaaaccgtccctgtaa 192  Q
    |||||||||||||||||||||||||||||||    
T  47848238 ttaggcttaaatatgcaaaccgtccctgtaa 47848268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 47864489 - 47864519
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  47864489 ggcttaaatatgcaaaccgtccctgtaattt 47864519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 39929414 - 39929361
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||||||||| ||| ||||| ||||||||| ||| ||||||||| ||||||    
T  39929414 aggcttaaatatgtaaaacgtccatgtaatttcgcgtgtttttgcaaatcgtcc 39929361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 47848888 - 47848856
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||| ||||||||||||||||||||||||||||    
T  47848888 taggtttaaatatgcaaaccgtccctgtaattt 47848856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 52502407 - 52502435
Alignment:
Q  167 cttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||    
T  52502407 cttaaatatgcaaaccgtccctgtaattt 52502435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 8330 - 8277
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||| |||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  8330 aggcttgaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 8277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 20587034 - 20587091
Alignment:
Q  160 atttaggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||| |||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||    
T  20587034 attttggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 20587091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 28917166 - 28917134
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||||    
T  28917166 taggcttaaatatgcaaaccgtccctgtaattt 28917134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 2237973 - 2238012
Alignment:
Q  157 tttattta-ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  2237973 tttatttatggcttaaatatgcaaaccgtccctgtaattt 2238012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 2238882 - 2238851
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  2238882 aggcttaaatatgcaaaccgtccctgtaattt 2238851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 20588518 - 20588467
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtc 216  Q
    |||||||||||| ||| ||||||||||||||| ||| ||||||||| |||||    
T  20588518 ggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtc 20588467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Original strand, 21716439 - 21716470
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  21716439 aggcttaaatatgcaaaccgtccctgtaattt 21716470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 21720258 - 21720227
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  21720258 aggcttaaatatgcaaaccgtccctgtaattt 21720227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 24559620 - 24559581
Alignment:
Q  156 ttttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  24559620 tttttttttggcttaaatatgcaaaccgtccctgtaattt 24559581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 29090877 - 29090920
Alignment:
Q  152 tttattttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||  |||| ||||||||||||||||||||||||||||||    
T  29090877 tttatttattttacgcttaaatatgcaaaccgtccctgtaattt 29090920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 3149907 - 3149949
Alignment:
Q  153 ttattttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||  ||||||||||||||||||||||| ||||||||    
T  3149907 ttattttataaaggcttaaatatgcaaaccgtccttgtaattt 3149949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 28916285 - 28916315
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  28916285 ggcttaaatatgcaaaccgtccctgtaattt 28916315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 1939441 - 1939480
Alignment:
Q  156 ttttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  1939441 ttttttttaggcttaaatatgcaaactgtccctgtaattt 1939480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 195
Target Start/End: Complemental strand, 23154369 - 23154338
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||||||||||||||||||||||||||||||    
T  23154369 aggcttaaatatgcaaaccgtccctgtaattt 23154338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 11761038 - 11761068
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  11761038 ggcttaaatatgcaaaccgtccctgtaattt 11761068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 23153548 - 23153578
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  23153548 ggcttaaatatgcaaaccgtccctgtaattt 23153578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 26635510 - 26635540
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  26635510 ggcttaaatatgcaaaccgtccctgtaattt 26635540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 9122721 - 9122753
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||| ||||||||||||||||||    
T  9122721 taggcttaaatatggaaaccgtccctgtaattt 9122753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 37586724 - 37586752
Alignment:
Q  167 cttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||    
T  37586724 cttaaatatgcaaaccgtccctgtaattt 37586752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0765 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 416 - 386
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaattt 195  Q
    |||||||||||||||||||||||||||||||    
T  416 ggcttaaatatgcaaaccgtccctgtaattt 386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 9130 - 9076
Alignment:
Q  163 taggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||| |||||||||| ||||||||||||||  ||| ||||||||| ||||||    
T  9130 taggctttaatatgcaaaacgtccctgtaattttgcgtgtttttgcaaatcgtcc 9076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 7701 - 7750
Alignment:
Q  168 ttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    ||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||    
T  7701 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtcc 7750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0518 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 1070 - 1110
Alignment:
Q  155 attttatttaggcttaaatatgcaaaccgtccctgtaattt 195  Q
    ||||| |||||||||||||||||||  ||||||||||||||    
T  1070 attttttttaggcttaaatatgcaattcgtccctgtaattt 1110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 9019 - 9075
Alignment:
Q  164 aggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtccttg 220  Q
    |||||| |||||||||| ||| ||||||||||| |||  |||||||| |||||||||    
T  9019 aggctttaatatgcaaaacgttcctgtaatttcgcgtgattttgcaaatcgtccttg 9075  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 193591 - 193643
Alignment:
Q  165 ggcttaaatatgcaaaccgtccctgtaatttcacgtatttttgcaattcgtcc 217  Q
    |||||||||||| ||| |||| |||||||||| ||| ||||||||| ||||||    
T  193591 ggcttaaatatgtaaaacgtctctgtaatttcgcgtgtttttgcaaatcgtcc 193643  T

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