View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_low_41 (Length: 237)

Name: NF15431_low_41
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_low_41
NF15431_low_41
[»] chr3 (13 HSPs)
chr3 (1-223)||(5454076-5454298)
chr3 (1-223)||(5445493-5445715)
chr3 (1-223)||(5489269-5489487)
chr3 (1-223)||(5502118-5502336)
chr3 (1-223)||(5524986-5525200)
chr3 (1-223)||(5803224-5803438)
chr3 (4-223)||(20342820-20343038)
chr3 (97-223)||(5483821-5483947)
chr3 (5-223)||(5854822-5855032)
chr3 (96-223)||(5849738-5849865)
chr3 (145-223)||(5829038-5829116)
chr3 (1-39)||(5849651-5849689)
chr3 (151-221)||(3120899-3120969)
[»] chr6 (1 HSPs)
chr6 (1-223)||(25810097-25810319)
[»] chr8 (2 HSPs)
chr8 (145-210)||(19398702-19398767)
chr8 (145-210)||(19415058-19415123)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5454298 - 5454076
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454298 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 5454199  T
Q  101 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454198 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 5454099  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    |||||||||||||||||||||||    
T  5454098 caaaaatgaagtaaagttgatgg 5454076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5445715 - 5445493
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5445715 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 5445616  T
Q  101 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5445615 actaacatttccaaaaatatgactagggcgtaatggtagacggccaagagattgctgttaagaggctttctaaaacatcaggacaaggaactgaggagtt 5445516  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    |||||||||||||||||||||||    
T  5445515 caaaaatgaagtaaagttgatgg 5445493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5489487 - 5489269
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||   ||||||||||||||||||    ||||||    
T  5489487 aagttgggagaaggtggttttggagcagtgtacaaggtatagtcttcgatatcatgttagtttatctatgtagttatttcaccatgtact----ctaagt 5489392  T
Q  101 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    |||||||||| ||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  5489391 actaaaattttcaaaaatattactagggcgtaatggttgacggccaagagattgctgttaagaggctttctaaaacatcggcacaaggaaccgaggagtt 5489292  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    ||||||||||||||| |||||||    
T  5489291 caaaaatgaagtaaacttgatgg 5489269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5502336 - 5502118
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||   ||||||||||||||||||    ||||||    
T  5502336 aagttgggagaaggtggttttggagcagtgtacaaggtatagtcttcgatatcatgttagtttatctatatagttatttcaccatgtact----ctaagt 5502241  T
Q  101 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    ||||||||||  |||||||| || |||  ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||    
T  5502240 actaaaattttaaaaaatattaccagggtgtaatggtagacggccaagagattgctgttaaaaggctttctaaaacatcggcacaaggaaccgaggagtt 5502141  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    ||||||||||||||| |||||||    
T  5502140 caaaaatgaagtaaacttgatgg 5502118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5525200 - 5524986
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 100  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| || ||    ||||||| |||||||||||||||||| || |||||    |||    
T  5525200 aagttaggagaaggtggttttggaccagtgtacaaggtaaagtcttggttacca----agtttatctatcccgttatttcaccaagttctttc----agt 5525109  T
Q  101 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    |||||||||||||||||||| ||||||   || ||||||| ||||||||||||||||||||||||||  |||||||||||  ||||||| | ||||||||    
T  5525108 actaaaatttccaaaaatattactagggtataatggtagatggccaagagattgctgttaagaggctagctaaaacatcgatacaaggatccgaggagtt 5525009  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    |||||||||||||||| ||||||    
T  5525008 caaaaatgaagtaaagatgatgg 5524986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5803224 - 5803438
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 100  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||| | || || ||||    ||||||||  ||||||||| | || || |    ||||    
T  5803224 aagttaggagaaggtggttttggaccagtgtacaaggtaatgtcttcgttaccaagtta----atttatccttttatttcactaagtcctat----aagt 5803315  T
Q  101 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    |||||||||| || ||| || |||||| | || ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  5803316 actaaaattttcagaaacattactagggcttaatggtagatgggcaagagattgctgttaagaggctttctaaaacatcgggacaaggatccgaggagtt 5803415  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    |||||||||||||||||||||||    
T  5803416 caaaaatgaagtaaagttgatgg 5803438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 20343038 - 20342820
Alignment:
Q  4 ttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagtact 103  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || ||||||| ||    ||| ||||||  ||| || || |   ||||||||    
T  20343038 ttgggagaaggtggttttggaccagtgtacaaggtaaagtcttggctaacaagttagttaat----ccccttattttgccaagtgctataagtaagtact 20342943  T
Q  104 aaaatttcca---aaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    | |||||||    |||||||  ||||| | || || |||| ||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  20342942 ataatttcctcctaaaatattcctagggcataatgatagatggccaagagatcgccgttaagaggctttctaaaacatcgggacaaggaattgaggagtt 20342843  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    |||||||||||||||||||||||    
T  20342842 caaaaatgaagtaaagttgatgg 20342820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 5483947 - 5483821
Alignment:
Q  97 aagtactaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgagg 196  Q
    |||||||||||||||||||||||| ||||||   || || |||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  5483947 aagtactaaaatttccaaaaatattactagggtataatgctagatggccaagagattgctgttaagaggctttctaaaacatcgagacaaggatccgagg 5483848  T
Q  197 agttcaaaaatgaagtaaagttgatgg 223  Q
    |||||||||||||||||||| ||||||    
T  5483847 agttcaaaaatgaagtaaagatgatgg 5483821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 5854822 - 5855032
Alignment:
Q  5 tgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagtacta 104  Q
    |||||||||||||||||||||| || |||||||||| ||||||| || || ||||    ||| ||||| ||||||||  | ||||| |    |||||||     
T  5854822 tgggagaaggtggttttggaccggtatacaaggtattgtcttggttaccaagtta----attcatccccttatttcagaaagtactat----aagtactt 5854913  T
Q  105 aaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagttcaaa 204  Q
    ||||||| ||| |||| |||||| |||| || |||| |||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||    
T  5854914 aaatttctaaatatattactagggcgtaatgttagatggccgagagattgctgttaagaggctctctaaaacctcaggacaaggaaccgaggagttcaaa 5855013  T
Q  205 aatgaagtaaagttgatgg 223  Q
    |||||||| ||||||||||    
T  5855014 aatgaagtgaagttgatgg 5855032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 5849738 - 5849865
Alignment:
Q  96 taagtactaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgag 195  Q
    ||||||||||||||| || ||| || |||||| | || ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||  ||||    
T  5849738 taagtactaaaattttcagaaacattactagggcttaatggtagatggccaagagattgctgttaagaggctttgtaatacatcgggacaaggagttgag 5849837  T
Q  196 gagttcaaaaatgaagtaaagttgatgg 223  Q
    ||||||||||||||||||||||||||||    
T  5849838 gagttcaaaaatgaagtaaagttgatgg 5849865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 5829038 - 5829116
Alignment:
Q  145 caagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagttcaaaaatgaagtaaagttgatgg 223  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  5829038 caagagattgctgttaagaggctatctaaaacatcaggacaaggaactgaggaattcaaaaatgaagtaaagttgatgg 5829116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5849651 - 5849689
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggta 39  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  5849651 aagttaggagaaggtggttttggaccagtgtacaaggta 5849689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 3120899 - 3120969
Alignment:
Q  151 attgctgttaagaggctttctaaaacatcgggacaaggaactgaggagttcaaaaatgaagtaaagttgat 221  Q
    ||||||||||| |||||||| ||||||||||  |||||   |||||| ||||| |||||||||| ||||||    
T  3120899 attgctgttaaaaggctttcgaaaacatcggttcaaggtgttgaggaattcaagaatgaagtaatgttgat 3120969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25810097 - 25810319
Alignment:
Q  1 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25810097 aagttgggagaaggtggttttggaccagtgtacaaggtatagtcttggatatcatgttagtttatttatcccgttatttcaccatgtactttctctaagt 25810196  T
Q  101 actaaaatttccaaaaatatgactaggccgtactggtagacggccaagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagtt 200  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25810197 actaaaatttccaaaaatatgactaggacgtaatggtagacggccaagagattgctgttaagaggctttctaaaacatcaggacaaggaactgaggagtt 25810296  T
Q  201 caaaaatgaagtaaagttgatgg 223  Q
    |||||||||||||||||||||||    
T  25810297 caaaaatgaagtaaagttgatgg 25810319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 19398702 - 19398767
Alignment:
Q  145 caagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagttcaaaaatgaa 210  Q
    ||||| |||||||| || |||||||| |||||||| |||||||||| || ||| ||||||||||||    
T  19398702 caagaaattgctgtaaaaaggctttcgaaaacatctggacaaggaattgtggaattcaaaaatgaa 19398767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 19415058 - 19415123
Alignment:
Q  145 caagagattgctgttaagaggctttctaaaacatcgggacaaggaactgaggagttcaaaaatgaa 210  Q
    ||||| |||||||| || |||||||| |||||||| |||||||||| || ||| ||||||||||||    
T  19415058 caagaaattgctgtaaaaaggctttcgaaaacatctggacaaggaattgtggaattcaaaaatgaa 19415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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