View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_42 (Length: 234)
Name: NF15431_low_42
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 42428005 - 42428168
Alignment:
| Q |
18 |
gttactgtgaatttctttcaatttgaattttctttgtttgtagctgtttaaattgttcttggttgcacgatatacaagtaatacacnnnnnnnactcttt |
117 |
Q |
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| T |
42428005 |
gttactgtgaatttctttcaatttgaattttctttgtttgtagctgtctaaattgttcttggttgcacgatatacaagtaattcactttttttactcttt |
42428104 |
T |
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| Q |
118 |
gttaccttgaaaaacacatgacaaacaa-tttagatgtggtaaaatttgggacctggatcgtct |
180 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
42428105 |
gttgccttgaaaaacacatgacaaacaactttagatgtggtaaaatttgggaccgagatcgtct |
42428168 |
T |
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