View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_43 (Length: 227)
Name: NF15431_low_43
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_43 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 48557805 - 48557917
Alignment:
| Q |
115 |
caagcacaagcgcaagaactatcaacaacaacagaatcttcaccatcactcctaaacaacaaataaccaacagcaagaccaacaacaatagcaataaaca |
214 |
Q |
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| T |
48557805 |
caagcacaagcgcaagaactatcaacaacaacagaatcttcaccatcactcctaaacaacaaataaccaacagcaagaccaacaacaatagcaataaaca |
48557904 |
T |
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| Q |
215 |
caccaccgttata |
227 |
Q |
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||||||||||||| |
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| T |
48557905 |
caccaccgttata |
48557917 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 48557692 - 48557749
Alignment:
| Q |
7 |
aaacttacataccataaaccaaaaagatctaaagttcccatatgcaacagaccttagg |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48557692 |
aaacttacataccataaaccaaaaagatctaaagttcccatatgcaacagaccttagg |
48557749 |
T |
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