View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_45 (Length: 212)
Name: NF15431_low_45
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_45 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 48558356 - 48558144
Alignment:
| Q |
1 |
cagaaatgacaagaacagaatcatccatagaagaaaaataaatagaggcatcatcgttcattgttttgtgcaacnnnnnnnnnnnnnncct-gaagttca |
99 |
Q |
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| T |
48558356 |
cagaaatgacaagaacagaagaatccatagaagaaaaataaatagaggcatcatcgttcattgttttgtgcaacaaaaaaaaaaaaaaccttgaagttca |
48558257 |
T |
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| Q |
100 |
gaaacaaaaaattcagcgaagatgatgcacatgactttctactggagcaaaaaattgacactccttttcgattcatggaaaaccgattcatggacgattt |
199 |
Q |
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| T |
48558256 |
gaaacaaaaaattcagcgaagatgatgcacatgactttctactggagcaaaaaagtgacactccttttcgattcatggaaaaccgattcatggacgagtt |
48558157 |
T |
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| Q |
200 |
atgcactgagtct |
212 |
Q |
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||||||||||||| |
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| T |
48558156 |
atgcactgagtct |
48558144 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 3664121 - 3664215
Alignment:
| Q |
116 |
cgaagatgatgcacatgactttctactggagcaaaaaattgacactccttttcgattcatggaaaaccgattcatggacgatttatgcactgagt |
210 |
Q |
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||||||||||||||||||| || || ||| | ||||| ||||||| | || ||||||||||||||| |||||||||||| |||| ||||||| |
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| T |
3664121 |
cgaagatgatgcacatgacattatattggggaaaaaacgtgacactattatttgattcatggaaaaccaattcatggacgagttatctactgagt |
3664215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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