View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_5 (Length: 518)
Name: NF15431_low_5
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 91 - 499
Target Start/End: Original strand, 30447651 - 30448056
Alignment:
| Q |
91 |
tatattgatcggcatatttttgccacgtcattaaaatatatccaagtaaaaatgaatagtcaacaaaagtatatgtcgact-cagctctaggtaagtgtg |
189 |
Q |
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| T |
30447651 |
tatattgatcagcataatttttcctcatccttaaaatatatccatgtaaaaatgaatagtcaacaaaagtatatgtcgacttcagctctaggtaagtg-- |
30447748 |
T |
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| Q |
190 |
atatggtgccctcaaagagtagttttaaaggaatgttaagtcgcaagggaggaattttttnnnnnnngaaccaagggactaaaatcaaaacttgccccaa |
289 |
Q |
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| T |
30447749 |
atatggtgccctcatagagtagttttaaaggaatgccaagtggcaagggaggaattttttaaaaaa-gaaccaacggactaaaatcaaaacttgccc-aa |
30447846 |
T |
|
| Q |
290 |
atgtttaaacgcaagaaggacaaaatcacattgaagttttaatactgagaattttcattaagaaaatttaattcaatacatcgagtttatttgttactct |
389 |
Q |
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| T |
30447847 |
atatttaagcgcaaaaatgacaaaaacacattgaagttttaatactgagaatttttgttaagaaaatttaattcaatacatcgagtttatttgttagtct |
30447946 |
T |
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| Q |
390 |
tattccaaggaaagcaaatagggtcccctttttccggaattctacatggtcctgatttgaatacattccaattacaataatcacagttatctagtttttc |
489 |
Q |
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| T |
30447947 |
tattccaaggaaagcaaatagggtcccctttttccggagttctacatggtcctgattcgaatacattccaattgcaataatcacaattatctagtttttc |
30448046 |
T |
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| Q |
490 |
aacaccctgt |
499 |
Q |
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| T |
30448047 |
aacaccctgt |
30448056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 388 - 482
Target Start/End: Original strand, 30459506 - 30459600
Alignment:
| Q |
388 |
cttattccaaggaaagcaaatagggtcccctttttccggaattctacatggtcctgatttgaatacattccaattacaataatcacagttatcta |
482 |
Q |
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| T |
30459506 |
cttatcccaatgaaagcaaatagggtccccatgttcctgaagtctacatggtcctgatttaaatacattccaattgcaataatcacaattatcta |
30459600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 30458776 - 30458848
Alignment:
| Q |
91 |
tatattgatcggcatatttttgccacgtcattaaaatatatccaagtaaaaatgaatagtcaacaaaagtata |
163 |
Q |
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| T |
30458776 |
tatattaatcagcataattttgccacgtcattaaaacatatgcatgaggaaatggatagtcagcaaaagtata |
30458848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 38028369 - 38028328
Alignment:
| Q |
426 |
gaattctacatggtcctgatttgaatacattccaattacaat |
467 |
Q |
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| T |
38028369 |
gaattctacatggtcctgacttgaatatattccaattgcaat |
38028328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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