View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_6 (Length: 515)
Name: NF15431_low_6
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Complemental strand, 48951667 - 48951181
Alignment:
| Q |
12 |
atgaacagtagtagtgcccagctgattacaaaccttctaggataaatgagccaacagggtctaattcacctgactcaaggggctcgtccgaaccaacttg |
111 |
Q |
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| T |
48951667 |
atgaacagtagtagtgcccagctgattacaaaccttctaggataaatgagccaacagggtctaattcaggtgactcaagcggctcgtccgaaccaacttg |
48951568 |
T |
|
| Q |
112 |
gctgacctctggtgcttcatgtgtctgatcaacttgttcaggatttaactcctcgggttttaaatgtggtttactgtggtcaggaggggttgtttcaagt |
211 |
Q |
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| T |
48951567 |
gctgacctctggtgcttcatgtgtctgatcaacttgttcaggatttaactcctcgagttttaaatgtggtttactgtggtcaggaggggttgtttcaagt |
48951468 |
T |
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| Q |
212 |
tgctggtatttgggcttgtttttctcaaggagaaggtaggtggtacaataccaaaataacaatattctattttgcgctagcagtgtatccctaattgtac |
311 |
Q |
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| T |
48951467 |
tgctggtatttgggcttgtttttctcaaggagaaggtaggtggtacaataccaaaataacaatattctattttgcgctagcagtgtatccctaattgtac |
48951368 |
T |
|
| Q |
312 |
tttttccaaaggaaagacgttctagtgcctgtgaaatagagaaaaggacaagcaagtgaaacagatcagcattcaagaaagcaagcccaattaaacaacc |
411 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48951367 |
tttttccaaaggaaagacgttctagtgcctgcgaaatagagaaaaggacaagcaagtgaaacagatcagcattcaagaaagcacgcccaattaaacaacc |
48951268 |
T |
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| Q |
412 |
aatcttatattatccaagaaacattgacggtgtatatcatagttttattttaatttaactcaacataaatggttgaatggggatatatt |
500 |
Q |
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| T |
48951267 |
aatcttatattatccaagaaacattgacg--gtatatcatagttttattttaatttaactcaacataaatggttgaatggggatatatt |
48951181 |
T |
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