View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_7 (Length: 513)
Name: NF15431_low_7
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 48641040 - 48640788
Alignment:
| Q |
8 |
tgagatgaattgaactctaccaattgtatagctgccaatcagaaaaagagtccggggattaaaagcttctgcttgaatggcatcaataacaaattgtatt |
107 |
Q |
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| T |
48641040 |
tgagatgaattgaactctaccaattgtatagctgccaatcagaaaaagagtccggggattaaaagcttctgcttgaatggcatcaataacaaattgtatt |
48640941 |
T |
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| Q |
108 |
acagcctcttgttttggaaagtcatactgcaatgaaacacatcacaaatattcaattcccgcttcaatatattttgatctcttaaaaatatgnnnnnnng |
207 |
Q |
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| T |
48640940 |
acagcctcttgttttggaaagtcatactgcaatgaaacacgtcacaaatattcaattcccgcttcaatatattttgatctcttaaaaatatgtttttttg |
48640841 |
T |
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| Q |
208 |
aatctgtcattctttgaaagtgtgtttaatacctatacttaataaaataatgt |
260 |
Q |
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| T |
48640840 |
aatctgtcattctttgaaagtgtgtttaatacctatacttaataaaataatgt |
48640788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 498
Target Start/End: Complemental strand, 48640689 - 48640649
Alignment:
| Q |
459 |
agtttaatacacttcgtcggg-cgattgtaatattataatt |
498 |
Q |
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| T |
48640689 |
agtttaatacacttcgtcggggcgattgtaatattataatt |
48640649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 48640779 - 48640747
Alignment:
| Q |
368 |
tttgaggcaaacatgtttgtactgactatatgc |
400 |
Q |
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| T |
48640779 |
tttgaggcaaacatgtttgtactgactatatgc |
48640747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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