View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_8 (Length: 477)
Name: NF15431_low_8
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 41638365 - 41638812
Alignment:
| Q |
19 |
gttaagagctatgaaactgtcatgtggaggctgccatctaattactacatcagatttgtattgatcagcttgattcagaataggagaaacaatgaattct |
118 |
Q |
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| T |
41638365 |
gttaagagctatgaaactgtcatgtggaggctgccatctaattactacatcagatttgtattgatcagcttgattcagaataggagaaacaatgaattct |
41638464 |
T |
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| Q |
119 |
atgtggtcctctccaactccagattgctctaaaaatctgacgcgcgttgctattgtttgatatcgctacggccttgtaagctgatgccaatgtgaattca |
218 |
Q |
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| T |
41638465 |
atgtggtcctctccaactccagattgctctaaaaatctgacgcgcgttgctattgtttgatatcgctacggccttgtaagctgatgccaatgtgaattca |
41638564 |
T |
|
| Q |
219 |
ccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagggaagtgtat |
318 |
Q |
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| T |
41638565 |
ccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagggaagtgtat |
41638664 |
T |
|
| Q |
319 |
ttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccgtatagtcaa |
418 |
Q |
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| T |
41638665 |
ttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccgtatagtcaa |
41638764 |
T |
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| Q |
419 |
taacgagcatatcagtgtcagcccagttatctatccttccagaattca |
466 |
Q |
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| T |
41638765 |
taacgggcatatcagtgtcagcccagttatctatccttccagaattca |
41638812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 105 - 449
Target Start/End: Complemental strand, 2719403 - 2719080
Alignment:
| Q |
105 |
aaacaatgaattctatgtggtcctctccaactccagattgctctaaaaatctgacgcgcgttgctattgtttgatatcgctacggccttgtaagctgatg |
204 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| || || | | || | ||||||| |
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| T |
2719403 |
aaacattgaattctatgtggtcctctccaactccaaattgctctaaaaatctgatgcgcgttgctattgttcgatctcactgcagtctcattagctgata |
2719304 |
T |
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| Q |
205 |
ccaatgtgaattcaccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatt |
304 |
Q |
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| T |
2719303 |
ccagcgtgaatcaaccatcacttgtaagcctccaagcaagacagtcatcaccactttgaggatgaggtggaggcaacctcttgatgtca----------- |
2719215 |
T |
|
| Q |
305 |
tgagggaagtgtatttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgact |
404 |
Q |
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||||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| | || |||| |
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| T |
2719214 |
---------tgtatttatcaaactactctggtcccatctttct-tcactgtcaacataattttcaaccacttttgttgcttcaaaatgctcagtcagact |
2719125 |
T |
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| Q |
405 |
aaccgtatagtcaataacga-gcatatcagtgtcagcccagttatc |
449 |
Q |
| |
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||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
2719124 |
aaccgtatagtttat-acgaggcatatcagtgtcagcccagttatc |
2719080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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