View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_9 (Length: 472)
Name: NF15431_low_9
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 465
Target Start/End: Original strand, 12630653 - 12631089
Alignment:
| Q |
5 |
atcagtgcatgataacctatatgaaaacaatgttgaggatgttgaaatggtaacagatgcagggaaattaacttccttatacttgcaggacttgataaat |
104 |
Q |
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| T |
12630653 |
atcagtgcatgataacctatatgaaaacaatgttgaggatgttgaaatggtaacagatgcagggaaattaacttccttattcttgcaggacttgataaat |
12630752 |
T |
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| Q |
105 |
tcaatttcgatcgataagaagaaacaaatcaaaagagtgttttattgtcctaggtggatcaataaagttctcttttaaaatccacttgtgttgctttggc |
204 |
Q |
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| T |
12630753 |
tcaatt----tcgataagaagaaacaaatcaaaagagtgttttattgtcctaggtggatcaataaagttctcttttaaaaaccacttgggttgctttggt |
12630848 |
T |
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| Q |
205 |
ggtattgacttgaaatttgtgagtgtgctccttcttaaggtctcagttaaaaagaaatataagtatatctaccaacaaccaaataaaaataataattttg |
304 |
Q |
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| T |
12630849 |
ggtattgacttgaaatttg-----gtgccc-----------ctca---aaaaagaaatataggtatatctaccaacaaccaagtaaaaataataattttg |
12630929 |
T |
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| Q |
305 |
gtgctcctnnnnnnnttgtaccatgggcggccgcccatgcttaaggccaccctagatgagactctaggggtacacacattctaaacacctttgataatga |
404 |
Q |
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| T |
12630930 |
gtgaccctcaaaaaattgtaccatgggcggccgcccatgcttaaggccaccctagatgagactcta-gggtaaacacattctaaacacctttgataatga |
12631028 |
T |
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| Q |
405 |
tatctcgttaaaggaaagaattaagctttctctcttgatttctctcaggatattcttttca |
465 |
Q |
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| T |
12631029 |
tatctcgttaaaggaaagaactaagctttctctcttgatttctttgaggatattcttttca |
12631089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 38551790 - 38551832
Alignment:
| Q |
205 |
ggtattgacttgaaatttgtgagtgtgctccttcttaaggtct |
247 |
Q |
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| T |
38551790 |
ggtattgatttgaaatttgggagtgtgctctttcttaaggtct |
38551832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 34688652 - 34688728
Alignment:
| Q |
378 |
acacattctaaacacctttgataatgatatctcgttaaaggaaagaattaagctttctctcttgatttctctcaggat |
455 |
Q |
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| T |
34688652 |
acacattctaaacaccttgggtagtgagatcccattaaatgaa-gatctaagctttctctcttgatttctcttaggat |
34688728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 34693180 - 34693256
Alignment:
| Q |
378 |
acacattctaaacacctttgataatgatatctcgttaaaggaaagaattaagctttctctcttgatttctctcaggat |
455 |
Q |
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| T |
34693180 |
acacattctaaacaccttgggtagtgagatcccattaaatgaa-gatctaagctttctctcttgatttctcttaggat |
34693256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 20756738 - 20756682
Alignment:
| Q |
248 |
cagttaaaaagaaatataagtatatctaccaacaaccaaataaaaataataattttg |
304 |
Q |
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| T |
20756738 |
cagttaaaaagaaatatatttatatgtactaaccaccgagtaaaaataataattttg |
20756682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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