View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15432_high_1 (Length: 324)
Name: NF15432_high_1
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15432_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 6855463 - 6855168
Alignment:
| Q |
17 |
actttgcaaattgcgcttcgtggcctgaaaaataagatattgttaatgcttgttttcatgttggtgggaataagtatggtggaaatgtagttatatacag |
116 |
Q |
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| T |
6855463 |
actttgcaaattgcgcttcgtggcctgaaaaataatatattgttaatgcttgttttcatgttggtgggaataagtatggtggaaatgtagttatatacag |
6855364 |
T |
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| Q |
117 |
tccgggttgtcaaaacccttgatgggaagcttgtttaccgacaactaggaagagagctagtggaccaaaatgcattgttaatggaaagagggttcataag |
216 |
Q |
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| T |
6855363 |
tccgggttgtcaaaaccctcgatgggaagcttgtttaccgacaactaggaagagagctagtggaccaaaatgcattgttaatggaaagagggttcataag |
6855264 |
T |
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| Q |
217 |
gggggattccatgtttaaggcccacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctg |
312 |
Q |
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| T |
6855263 |
gggggattccatgtttaaggcccacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctg |
6855168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 24242462 - 24242532
Alignment:
| Q |
143 |
aagcttgtttacc-gacaactaggaagagagctagtggaccaaaatgcattgttaatggaaagagggttca |
212 |
Q |
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| T |
24242462 |
aagcttgtttatcagacaaccaagaagagagctagtggacctaaatgccctgttactggaaagaggattca |
24242532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 24244968 - 24245048
Alignment:
| Q |
232 |
taaggcccacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctg |
312 |
Q |
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| T |
24244968 |
taagacccactgagtacaagagatctaggttacctagaaacaggaggactgtgaatcgtgcctatggtggagttttatctg |
24245048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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