View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15432_high_15 (Length: 328)

Name: NF15432_high_15
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15432_high_15
NF15432_high_15
[»] scaffold0145 (1 HSPs)
scaffold0145 (1-322)||(12464-12785)
[»] chr4 (5 HSPs)
chr4 (1-322)||(16284932-16285253)
chr4 (9-246)||(18231449-18231684)
chr4 (71-246)||(11555897-11556070)
chr4 (103-216)||(11098355-11098468)
chr4 (257-322)||(11098291-11098356)
[»] chr6 (5 HSPs)
chr6 (1-322)||(10641216-10641537)
chr6 (88-321)||(14970059-14970294)
chr6 (36-244)||(10906699-10906907)
chr6 (130-246)||(9191065-9191181)
chr6 (1-93)||(14965986-14966078)
[»] chr7 (5 HSPs)
chr7 (1-246)||(22614701-22614946)
chr7 (1-246)||(11655386-11655631)
chr7 (12-319)||(20025893-20026200)
chr7 (1-204)||(13477489-13477689)
chr7 (145-317)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (29-322)||(24831922-24832221)
chr5 (54-240)||(13935664-13935849)
[»] chr3 (8 HSPs)
chr3 (42-322)||(14481522-14481808)
chr3 (1-163)||(17790761-17790923)
chr3 (1-163)||(19099203-19099365)
chr3 (155-322)||(17790941-17791108)
chr3 (155-322)||(19099381-19099548)
chr3 (179-239)||(22159871-22159931)
chr3 (179-239)||(21975275-21975335)
chr3 (179-239)||(21997706-21997766)
[»] scaffold1001 (1 HSPs)
scaffold1001 (1-246)||(1301-1545)
[»] chr2 (3 HSPs)
chr2 (10-317)||(44586360-44586669)
chr2 (213-322)||(24786268-24786377)
chr2 (155-240)||(16862347-16862432)
[»] chr1 (2 HSPs)
chr1 (127-240)||(1567041-1567154)
chr1 (39-108)||(1567212-1567281)


Alignment Details
Target: scaffold0145 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 12464 - 12785
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  12464 ccactcccatcataatcatagataaatgtcatcactctcatcatcgtcataaattaaccatcgacactctcatcatgacaacaacatagacatcatcatt 12563  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttatagga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12564 ctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtcatagttatagga 12663  T
Q  201 ctccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12664 ctccccatcattactctttatcatccgcttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgccaacatccatttat 12763  T
Q  301 tttattttagtattcatctcac 322  Q
    ||||||||||||||||||||||    
T  12764 tttattttagtattcatctcac 12785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 16285253 - 16284932
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  16285253 ccactcccatcatcatcatagataaatgtcatcactctcatcatcgtcataaattaaccatcgacactctcatcatgacaacaacatagacatcatcatt 16285154  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttatagga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16285153 ctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtcatagttatagga 16285054  T
Q  201 ctccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttat 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16285053 ctccccatcattactctttatcatccacttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgccaacatccatttat 16284954  T
Q  301 tttattttagtattcatctcac 322  Q
    ||||||||||||||||||||||    
T  16284953 tttattttagtattcatctcac 16284932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 18231684 - 18231449
Alignment:
Q  9 atcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcat 108  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||| |||||||||  | | | ||||||| |||| |||||||||||| |||||||||||||    
T  18231684 atcatcatcatagataaaaatcatcactctcatcatcgttatagattaaccatcaagattatcatcatcacaataacatagacatcgtcattctcatcat 18231585  T
Q  109 tattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccat 208  Q
    |||||||||| ||  ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| || ||| ||| ||| |||    
T  18231584 tattataatataacatcatcattttctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgttacag-tat-ggattcctcat 18231487  T
Q  209 cattactctttatcatccgcttatatcaccaccttatc 246  Q
    ||||||||| ||||| ||| ||||||||||||||||||    
T  18231486 cattactctctatcaaccgtttatatcaccaccttatc 18231449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 71 - 246
Target Start/End: Original strand, 11555897 - 11556070
Alignment:
Q  71 catcatgacaacaacatagacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattac 170  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||||||| ||  ||| ||||||| ||||||||||||||||||||||||||||||||||     
T  11555897 catcatcacaacaacataaacatcgtcattctcatcattattataatataacatcaacatttcctatcgtagtaatttctttacatatatataatattaa 11555996  T
Q  171 tcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 246  Q
    ||||||| ||||| ||| | || ||| ||| ||  |||||||||||| ||||| ||  ||||||||||||||||||    
T  11555997 tcgtcatcactctttgtgacag-tat-ggattcatcatcattactctctatcaaccatttatatcaccaccttatc 11556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 11098468 - 11098355
Alignment:
Q  103 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggact 202  Q
    |||||||||||||||| ||  |||| ||||||||   |||||||||||||||||||||||||||||| ||||||| ||||||  ||| | ||||||||||    
T  11098468 catcattattataatataacatcattatttcccacaatagtaatttctttacatatatataatattaatcgtcatcactctccattacaattataggact 11098369  T
Q  203 ccccatcattactc 216  Q
    || |||||||||||    
T  11098368 cctcatcattactc 11098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 11098356 - 11098291
Alignment:
Q  257 tccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 322  Q
    ||||||||||| ||||||||| || || |  ||||||| ||||||||| |||| ||||||||||||    
T  11098356 tccacaccttatgcgtgactccttatacgtcaacatccctttattttactttattattcatctcac 11098291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 10641537 - 10641216
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    |||||| ||||| |||| ||||||||| |||||||  ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  10641537 ccactctcatcagcatcatagataaatatcatcaccttcatcattgtcataaattaaccattgacactctcatcatcacaacaacatagacatcatcatt 10641438  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttatagga 200  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| | ||||||||||    
T  10641437 ctcatcattattataatataacctcataatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcgctctctgtcacagttatagga 10641338  T
Q  201 ctccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttat 300  Q
    |||| | |||||||||| ||||||||||||||||||||||||||||   || ||| ||||| ||| ||| ||||||||||||| || ||||||||||||     
T  10641337 ctcctcgtcattactctctatcatccgcttatatcaccaccttatctcttcattaatccacgcctcacgtgtgactcattctacgccaacatccatttac 10641238  T
Q  301 tttattttagtattcatctcac 322  Q
    ||||||||| ||||||||||||    
T  10641237 tttattttattattcatctcac 10641216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 321
Target Start/End: Original strand, 14970059 - 14970294
Alignment:
Q  88 agacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatat--atataatattactcgtcattactctct 185  Q
    ||||||| ||||||||||  ||||||||||| ||  ||||||||||||||||  ||||||||| || ||||  |||||||||||  |||||| | ||| |    
T  14970059 agacatcgtcattctcattgttattataatataacatcatcatttcccatcgcggtaatttctataaatatatatataatattaaccgtcatcattcttt 14970158  T
Q  186 gttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatg 285  Q
    || | |||| ||||||||| |||||||||||| ||||||||  |||||||||||| |||||   || ||| ||||||| ||||| |||||||||||||      
T  14970159 gtcacagttgtaggactcctcatcattactctctatcatccatttatatcaccactttatctcttcattaatccacactttacgagtgactcattctaca 14970258  T
Q  286 ctaacatccatttattttattttagtattcatctca 321  Q
      ||||| | |||||||||||||| ||||| |||||    
T  14970259 tcaacattcctttattttattttattattcttctca 14970294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 10906907 - 10906699
Alignment:
Q  36 tctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcattattataatacaaactcatcatttccc 135  Q
    |||||| ||| |||||| ||||||||  | | ||||||||| |  ||||  |||||||| ||||||||||||||||||||||| ||  |||||||||| |    
T  10906907 tctcattatcatcataatttaaccatcaacattctcatcataatgacaatttagacatcgtcattctcatcattattataatataacatcatcatttcac 10906808  T
Q  136 atcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatc 235  Q
    ||| || | || | || ||||||| |||||||||  |  | | |||||||||   |||||||||| ||| | |||||||||||| ||| ||| |||||||    
T  10906807 atcctatttatatgttgacatatacataatattaacccccttcactctctgtcgcagttataggattcctcgtcattactctttgtcaaccgtttatatc 10906708  T
Q  236 accacctta 244  Q
    |||||||||    
T  10906707 accacctta 10906699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 246
Target Start/End: Original strand, 9191065 - 9191181
Alignment:
Q  130 tttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgct 229  Q
    |||| ||||||| | |||| || |||||||||| |||| | || |||| ||||| | | | |||||||||| ||| |||||||||||| ||||| ||| |    
T  9191065 tttctcatcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcctcatcattactctctatcaaccgtt 9191164  T
Q  230 tatatcaccaccttatc 246  Q
    |||||||||||||||||    
T  9191165 tatatcaccaccttatc 9191181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 14965986 - 14966078
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacat 93  Q
    |||||| ||||||||||  |||||||  |||||||||||||||| ||||||||||||||||  |  ||||||| || |||||| |||||||||    
T  14965986 ccactctcatcatcatcacagataaacatcatcactctcatcattgtcataaattaaccatcaattctctcataatcacaacatcatagacat 14966078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 22614946 - 22614701
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    |||||| |||||||||| ||||||||| || ||||||||||||||||||||| |||||||| || ||||||||||| ||||||| ||| ||||| |||||    
T  22614946 ccactctcatcatcatcatagataaatatcgtcactctcatcatcgtcataagttaaccatcgacactctcatcatcacaacaatatatacatcgtcatt 22614847  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttatagga 200  Q
    ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  22614846 ctcttcattattataatataacctcatcatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcactctctgtcatagttatagga 22614747  T
Q  201 ctccccatcattactctttatcatccgcttatatcaccaccttatc 246  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||    
T  22614746 ctcctcatcaatactctctatcatccgcttatatcaccaccttatc 22614701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 11655386 - 11655631
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||| |||||    
T  11655386 ccactctcatcatcatcatagataaatatcatcactctcatcatcgtcataagttaaccatggacactctcatcatcacaacaacatagacatcgtcatt 11655485  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttatagga 200  Q
    ||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| || || | ||||||||| | || |||||||    
T  11655486 ctcttcattattataatataacctcatcattttccatcgtagtaatttctttacatatatataatattaatcatcgtcactctctgtcacagctatagga 11655585  T
Q  201 ctccccatcattactctttatcatccgcttatatcaccaccttatc 246  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||    
T  11655586 ctcctcatcaatattctttatcatccgcttatatcaccaccttatc 11655631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 20025893 - 20026200
Alignment:
Q  12 atcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcattat 111  Q
    |||||| ||||||||  ||||||||||||  |||| ||||| ||||||||| |  ||||||||||||||| |||||||||||||||||| ||||  ||||    
T  20025893 atcatcatagataaacatcatcactctcactatcggcataacttaaccattaacgctctcatcatgacaaaaacatagacatcatcattgtcattgttat 20025992  T
Q  112 tataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcat 211  Q
    ||||||| ||  ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||| ||| |||||| ||||||||| | ||||    
T  20025993 tataatataacatcatcatttgccatcatggtaatttctttacatatatataatatgaatcgtcatcactctttgtcatagttgtaggactcctcttcat 20026092  T
Q  212 tactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagt 311  Q
    || ||| ||||||  | ||||||||| ||||||||   || ||| || |||||||||||||||||||||  | |  ||||||| |||||| ||||||| |    
T  20026093 tattctctatcatatgtttatatcacaaccttatctcttcattaatcaacaccttacgcgtgactcatttgacgtcaacatccctttattctattttatt 20026192  T
Q  312 attcatct 319  Q
    ||||||||    
T  20026193 attcatct 20026200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13477689 - 13477489
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    |||||| |||||||||| ||||||||  ||||||||||||||||||| ||| |||||||||  | | | ||||||| |||||||||||||||            
T  13477689 ccactctcatcatcatcatagataaaattcatcactctcatcatcgttatagattaaccatcaacattatcatcatcacaacaacatagaca-------- 13477598  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttac------atatatataatattactcgtcattactctctgttatagtt 194  Q
      |||||||||||||||| ||  ||||| |||||||||||||||||||||||||      ||||||||||||||| ||||||| ||||| ||||| ||||    
T  13477597 -acatcattattataatataacatcatcctttcccatcgtagtaatttctttacatatatatatatataatattaatcgtcatcactctttgttacagtt 13477499  T
Q  195 ataggactcc 204  Q
    ||||||||||    
T  13477498 ataggactcc 13477489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 317
Target Start/End: Complemental strand, 4531820 - 4531649
Alignment:
Q  145 atttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccacctta 244  Q
    |||| |||||||||||||||||| | | ||||| |||||  || | | |||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||    
T  4531820 atttatttacatatatataatatcaattgtcatcactcttcgtcaca-ttat-ggattcctcatcattactctctatcaaccgtttatatcaccacctta 4531723  T
Q  245 tcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttattttagtattcat 317  Q
    ||   || ||| ||||  |||||| ||||||||| || || || |||| || | |||||||||||| |||||||    
T  4531722 tctcttcattaatccaacccttacacgtgactcatttatacgccaacacccctctattttattttattattcat 4531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 24832221 - 24831922
Alignment:
Q  29 tcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcattattataatacaaactcatc 128  Q
    |||||| ||||||||||||||||| |||||||| || ||| ||||||| || |||||||||||||| |||||||||||| ||||||| || || ||||||    
T  24832221 tcatcattctcatcatcgtcataagttaaccatcgacactatcatcatcacgacaacatagacatcgtcattctcatcaatattatagtataacctcatc 24832122  T
Q  129 atttcccatcgtagtaatttctttacat------atatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatc 222  Q
    ||||| ||||||||||||||||||||||      ||||||||||||| || |||| ||||| ||| | | |||||||||||| |||||||||||| ||||    
T  24832121 atttctcatcgtagtaatttctttacatatatgtatatataatattaatcatcatcactctttgtcacaattataggactcctcatcattactctctatc 24832022  T
Q  223 atccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 322  Q
    ||||||||| ||||||| | ||||   || ||| || || ||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||    
T  24832021 atccgcttacatcaccatcgtatctcttcattagtcaactccttacgcgtgactcattctacgccaacatccctttattttattttattattcatctcac 24831922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 13935664 - 13935849
Alignment:
Q  54 ttaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttcttta 153  Q
    |||||||| || ||||||||||| |||||||  |||||||  || || || |||||||||||||| ||  |||| |||||| |||||| | |||  ||||    
T  13935664 ttaaccatcgacactctcatcatcacaacaatgtagacatagtcgttatcttcattattataatataacatcattatttcc-atcgtatttattcattta 13935762  T
Q  154 catatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccac 240  Q
    |||| ||||| ||| | | ||||| ||||| ||| |  ||||||||| |||  ||||||||||| ||||| ||| ||||||||||||    
T  13935763 catagatatagtatcaattgtcatcactctttgtcaccgttataggattcctaatcattactctctatcaaccgtttatatcaccac 13935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 42 - 322
Target Start/End: Complemental strand, 14481808 - 14481522
Alignment:
Q  42 catcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcattattataatacaaactcatcatttcccatcgta 141  Q
    ||||||||||| |||||||| || ||| ||||||| ||||||||||||||||| |||| ||||||| ||||||| || || |||||||| ||||||||||    
T  14481808 catcgtcataagttaaccatcgacactatcatcatcacaacaacatagacatcgtcatcctcatcaatattatagtataacctcatcatgtcccatcgta 14481709  T
Q  142 gtaatttctttacatatatata------atattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatc 235  Q
    ||||||||||||||||||||||      |||||| || |||| ||||| ||| | |||||||||||||| |||||||||||| ||||||||||||| |||    
T  14481708 gtaatttctttacatatatatatatataatattaatcatcatcactctttgtcacagttataggactcctcatcattactctctatcatccgcttacatc 14481609  T
Q  236 accaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 322  Q
    ||||   ||||   || ||| ||||| ||||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||    
T  14481608 accattgtatctcttcattaatccactccttacgcgtgactcattctacgccaacatccctttattttattttattattcatctcac 14481522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17790761 - 17790923
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    |||||| |||||||||| | ||||||| ||||||||||||||||| | ||||||||||||| ||  |||||||||| ||||||||||| ||||| |||||    
T  17790761 ccactctcatcatcatcatcgataaatatcatcactctcatcatctttataaattaaccatcgactctctcatcatcacaacaacatatacatcgtcatt 17790860  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata 163  Q
    || ||||| ||| ||||| || |||||||||| | ||||||||||| | | || |||||||||    
T  17790861 cttatcatcattctaatataacctcatcattttctatcgtagtaatatatatatatatatata 17790923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 19099203 - 19099365
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    |||||| |||||||||| | ||||||| ||||||||||||||||| | ||||||||||||| ||  |||||||||| ||||||||||| ||||| |||||    
T  19099203 ccactctcatcatcatcatcgataaatatcatcactctcatcatctttataaattaaccatcgactctctcatcatcacaacaacatatacatcgtcatt 19099302  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata 163  Q
    || ||||| ||| ||||| || |||||||||| | ||||||||||| | | || |||||||||    
T  19099303 cttatcatcattctaatataacctcatcattttctatcgtagtaatatatatatatatatata 19099365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 322
Target Start/End: Original strand, 17790941 - 17791108
Alignment:
Q  155 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 254  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  17790941 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 17791040  T
Q  255 attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 322  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||  || |||||| |||||    
T  17791041 aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcac 17791108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 322
Target Start/End: Original strand, 19099381 - 19099548
Alignment:
Q  155 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 254  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  19099381 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 19099480  T
Q  255 attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 322  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||  || |||||| |||||    
T  19099481 aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcac 19099548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 22159871 - 22159931
Alignment:
Q  179 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 239  Q
    ||||| ||| |||||||||||| ||| |||||||||||| ||||| ||| |||||||||||    
T  22159871 actctttgtcatagttataggattcctcatcattactctctatcaaccgtttatatcacca 22159931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 21975275 - 21975335
Alignment:
Q  179 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 239  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21975275 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21975335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 21997706 - 21997766
Alignment:
Q  179 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 239  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21997706 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21997766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1301 - 1545
Alignment:
Q  1 ccactcccatcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcatt 100  Q
    |||||| |||||||||| ||||||||| ||||| || ||||||||||||||  ||||||||  | ||| ||||||| ||||||||||||||||| |||||    
T  1301 ccactctcatcatcatcatagataaatatcatcgctatcatcatcgtcataggttaaccatctacactatcatcatcacaacaacatagacatcgtcatt 1400  T
Q  101 ctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttatagga 200  Q
    |||||||||||||||||| || |||||||||| |||| || ||||||| ||| || ||||| ||||||| | ||||| ||||||| | |  |||||||||    
T  1401 ctcatcattattataatataacctcatcattttccattgttgtaatttatttccacatata-aatattaatagtcatcactctctttcacggttatagga 1499  T
Q  201 ctccccatcattactctttatcatccgcttatatcaccaccttatc 246  Q
    |||| ||| | |||||| |||||||||| ||| ||| ||| |||||    
T  1500 ctcctcataaatactctatatcatccgcatatgtcatcacattatc 1545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 44586669 - 44586360
Alignment:
Q  10 tcatcatcttagataaatgtcatcactctcatcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcatt 109  Q
    |||||||| ||||||||  ||||||||||||||||||| ||| |||||||||  | |   ||||||| ||||||||| ||||| | ||||||||||||||    
T  44586669 tcatcatcatagataaacatcatcactctcatcatcgttatagattaaccatcaacatcatcatcatcacaacaacacagacaccgtcattctcatcatt 44586570  T
Q  110 attataatac---aaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactcccc 206  Q
    ||||| |||    ||  ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || ||| ||| ||| |    
T  44586569 attattataatttaacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacag-tat-ggattcctc 44586472  T
Q  207 atcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttat 305  Q
    ||||||||||| ||||| ||| ||||||||||||||||||   |  ||| ||||  |||||||| ||||||| |||||||  ||||||| | ||||||||    
T  44586471 atcattactctctatcaaccgtttatatcaccaccttatctctttattaatccaacccttacgcatgactcatttctatgtcaacatccctctattttat 44586372  T
Q  306 tttagtattcat 317  Q
    || | |||||||    
T  44586371 ttcattattcat 44586360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 322
Target Start/End: Original strand, 24786268 - 24786377
Alignment:
Q  213 actctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagta 312  Q
    ||||| |||||| || |||||||  |||||| || | || ||| || | |||||||| |||||| |||||| |  ||||||| |||||||||||||| ||    
T  24786268 actctctatcattcgtttatatcttcaccttctcttttcattaatctataccttacgtgtgacttattctacgtcaacatccctttattttattttatta 24786367  T
Q  313 ttcatctcac 322  Q
    ||||||||||    
T  24786368 ttcatctcac 24786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 16862347 - 16862432
Alignment:
Q  155 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccac 240  Q
    ||||||||||||||| || ||   || || |||| ||||||||||| ||| |||||||| ||||||||| ||| |||||| |||||    
T  16862347 atatatataatattaatcatcgacaccctttgttgtagttataggattcctcatcattagtctttatcaaccgtttatattaccac 16862432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 1567154 - 1567041
Alignment:
Q  127 tcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatcc 226  Q
    ||||||| ||||||| | |||| |||||||||||||||||| | ||||||| ||||| ||| | | ||||| || ||| ||| ||||| || ||||  ||    
T  1567154 tcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattattaccctctatccacc 1567055  T
Q  227 gcttatatcaccac 240  Q
    | ||||||||||||    
T  1567054 gtttatatcaccac 1567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 1567281 - 1567212
Alignment:
Q  39 catcatcgtcataaattaaccattgaaactctcatcatgacaacaacatagacatcatcattctcatcat 108  Q
    |||||||||||||||||||||||  | | | ||||| | |||| |||||||||||| |||||||||||||    
T  1567281 catcatcgtcataaattaaccatcaacattatcatcctcacaataacatagacatcgtcattctcatcat 1567212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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