View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15432_high_19 (Length: 317)

Name: NF15432_high_19
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15432_high_19
NF15432_high_19
[»] chr4 (5 HSPs)
chr4 (3-284)||(48912127-48912408)
chr4 (46-280)||(48958264-48958498)
chr4 (1-287)||(48965442-48965725)
chr4 (126-280)||(48961413-48961567)
chr4 (105-232)||(48951399-48951526)
[»] scaffold0536 (2 HSPs)
scaffold0536 (3-280)||(6293-6570)
scaffold0536 (3-284)||(10277-10556)
[»] chr6 (2 HSPs)
chr6 (9-280)||(12589957-12590231)
chr6 (3-234)||(12483246-12483477)
[»] chr2 (3 HSPs)
chr2 (47-234)||(13440363-13440550)
chr2 (85-284)||(13448479-13448675)
chr2 (144-231)||(13455000-13455087)
[»] chr7 (1 HSPs)
chr7 (25-248)||(3417334-3417557)
[»] chr5 (2 HSPs)
chr5 (47-248)||(28385483-28385684)
chr5 (42-234)||(12540848-12541040)
[»] chr8 (1 HSPs)
chr8 (93-234)||(12641353-12641494)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 48912127 - 48912408
Alignment:
3 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
48912127 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaac 48912226  T
103 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
48912227 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagaatgacaatgaagaggagaaaga 48912326  T
203 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48912327 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 48912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 46 - 280
Target Start/End: Complemental strand, 48958498 - 48958264
Alignment:
46 ataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaatt 145  Q
    ||||||| ||| ||||||||||||||||||||  |||| |||| || |||||||||||||||||||||||||| ||||| ||||||||  ||||||||||    
48958498 ataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaatt 48958399  T
146 catatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaag 245  Q
      |||||||||||||||| |||||| |||  ||  | || | |||||||||||||| ||| |||||||| || || || ||||||||||  || ||||||    
48958398 tgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaag 48958299  T
246 aagaaggctatgattattaagggttgggctccaca 280  Q
    ||||| | | |||| |||| ||| ||||| |||||    
48958298 aagaaaggtttgatcattagggggtgggccccaca 48958264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 48965725 - 48965442
Alignment:
1 cagtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaaca 100  Q
    ||||||| ||||| ||||||||||||||||| || || || | | ||||||| ||| |||||||| ||||||||||||  |||| || |  |||||||||    
48965725 cagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaaca 48965626  T
101 actttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaa 200  Q
     ||||||||||||||||| |  || ||||||||| |||| || || ||||||||| ||||    || ||  |||  ||| |||| | ||||||||||||     
48965625 gctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaag 48965526  T
201 gaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttctg 287  Q
     |||| ||||| |||||||| || ||||||||||  || |||   ||||||| | ||||||||| |||||||||||| |||||||||    
48965525 caaaagtggttaccaaagggattcgaagagagaaacattgga---aagaagggtttgattattaggggttgggctccgcaggttctg 48965442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 48961567 - 48961413
Alignment:
126 gaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttg 225  Q
    ||||||||| ||||||||||  |||||||||||||||| || ||| |||  | | |||| |  |||||||||||||| || |||||||| || || ||||    
48961567 gaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatttg 48961468  T
226 aagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 280  Q
    |||||||||  || | ||||||||||| | |||| |||||||| ||||| |||||    
48961467 aagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 48951526 - 48951399
Alignment:
105 tatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaa 204  Q
    |||||||||||  ||| ||| |||| |||  || | ||||||||||||||||| || ||||||||  ||| |||| | || | ||| |||||||| ||||    
48951526 tatgagattgcaagcgcgatagaagaatcaggttatgaattcatatgggttgtcccagaaaagaaggggaaggagaacgagagtgatgaggagaaggaaa 48951427  T
205 aatggttgccaaaggggtttgaagagag 232  Q
    ||||||| || | || ||||||||||||    
48951426 aatggttacccagggagtttgaagagag 48951399  T

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Target: scaffold0536 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 3 - 280
Target Start/End: Original strand, 6293 - 6570
Alignment:
3 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 102  Q
    ||||||||||| |||||| ||||||||||  ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  ||||||||||||    
6293 gtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaac 6392  T
103 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 202  Q
    |||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||||| |||||| |||  ||  |||| | ||||||||||||||     
6393 tttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaagg 6492  T
203 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccaca 280  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||    
6493 aaaatggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccaca 6570  T

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Target: scaffold0536; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 10277 - 10556
Alignment:
3 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 102  Q
    ||||||||||| |||||| ||||||||||||||| ||| | |||||  || ||| ||||||| ||||||||||||| |||| ||||||| ||||||||||    
10277 gtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcagataaacaac 10374  T
103 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 202  Q
    ||||||||||||||||| || | ||||||||| || |||||||  |||| ||||||||||| |||||| |||  ||| |||| | | |||||||||||||    
10375 tttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcctgagaagaaagggaaagagaatgagagtcaagaggagaaaga 10474  T
203 aaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 284  Q
    ||||||| | || || || |||||||| ||| |||| | ||||||||||| | ||||||||||||||||||| || ||||||    
10475 aaaatggctaccgaaaggatttgaagaaagagttattgcaaagaagaagggtttgattattaagggttgggcccctcaggtt 10556  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 12589957 - 12590231
Alignment:
9 gtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatg 108  Q
    ||||| |||||| |||||||||| |||||||| | ||||||||| ||| |||||||||||||||| |||  |||  |||| || ||||||||||||||||    
12589957 gtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaacaactttatg 12590056  T
109 agattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatg 208  Q
    ||||| |||| || || ||||||||  | ||||||||| |||||||| |||| || || ||| ||| |||  |||| | ||| ||||| ||| |||||||    
12590057 agatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatg 12590156  T
209 gttgccaaaggggtttgaagagagaattatcg---gaaagaagaaggctatgattattaagggttgggctccaca 280  Q
    |||||| |  || |||||||||||||  || |   |||||||||||| | |||| |||| ||||||||| |||||    
12590157 gttgcctagtggatttgaagagagaaacattgggagaaagaagaagggtttgatcattaggggttgggccccaca 12590231  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 12483246 - 12483477
Alignment:
3 gtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaac 102  Q
    ||||| ||||| ||||||   |||||||| ||||| || ||||| || || ||| |||||||||||||||| |||| |||  |||| || |||||||| |    
12483246 gtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgataaacagc 12483345  T
103 tttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaaga 202  Q
    |||| || ||| | ||||| || ||||||||| || |  |||||||||||||||||||||| || ||| ||| |||  |||| |  || |||||||||||    
12483346 tttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctgagaaaaaagggaaggaagatgagagcgatgaggagaaaga 12483445  T
203 aaaatggttgccaaaggggtttgaagagagaa 234  Q
    ||| |||||||| ||||| ||||| |||||||    
12483446 aaagtggttgccgaagggatttgaggagagaa 12483477  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 13440550 - 13440363
Alignment:
47 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 146  Q
    |||||||||| |||||||||| |||||||||       |||| || ||||||||||| |||||||| |||||||  || |||||||| ||||||  ||||    
13440550 taactcggtgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattc 13440451  T
147 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 234  Q
    ||||||||||||||||| |||||| |||  ||  |||| | ||| || ||||||||||| |||||||||||||| || ||||||||||    
13440450 atatgggttgttcctgagaagaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaa 13440363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 284
Target Start/End: Complemental strand, 13448675 - 13448479
Alignment:
85 atttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatga 184  Q
    ||||||| ||||||||||| || ||||| || || | ||| ||||||||  |||||  ||||||||||||||||||||| |||||| |||  ||  ||||    
13448675 atttttctgataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatga 13448576  T
185 caatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggtt 284  Q
     |  ||||| ||||||||||| ||||| || ||||| ||||||||||||| ||||||   |||||||| | |||| |||| ||||||||| |||||||||    
13448575 gagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggtt 13448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 13455087 - 13455000
Alignment:
144 ttcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagaga 231  Q
    ||||||||||||||||| || |||||| |||  ||  |||| |  |||||||||||| |||| |||||||| ||||| ||||||||||    
13455087 ttcatatgggttgttccggagaagaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagaga 13455000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 3417334 - 3417557
Alignment:
25 gttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggat 124  Q
    ||||||| |||||  |||||| |||||| ||| |||||||||| |||||||||  |    |||| || ||||||||||| ||||||||||| | ||  ||    
3417334 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaat 3417433  T
125 tgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggttt 224  Q
     ||||||||| |||||  ||||||||||||||||| ||| |||||| | |  ||  |||| || ||||| ||||||||||| |||||||| ||||| |||    
3417434 agaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggattt 3417533  T
225 gaagagagaattatcggaaagaag 248  Q
    || |||||||  || |||||||||    
3417534 gaggagagaaacattggaaagaag 3417557  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 28385684 - 28385483
Alignment:
47 taactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattc 146  Q
    |||||| || ||||||||||| |||||||||  |   ||||| || ||||||||||| ||||||||||| ||||   | ||||||||  |||||  ||||    
28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
147 atatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaattatcggaaaga 246  Q
    ||||||||||||||||| |||||| |||  ||  |||| |  ||||| ||||||||||| ||| |||||||||| ||||| |||||||  || |||||||    
28385584 atatgggttgttcctgagaagaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaaga 28385485  T
247 ag 248  Q
    ||    
28385484 ag 28385483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 12541040 - 12540848
Alignment:
42 caagataactcggtggtgtacatatgctttggaagccgatgtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacg 141  Q
    |||| |||||| |||||||||||||| |||||||||  |  |||||| |  || |||||||| ||||||||||| || |   | |||| |  | |||||     
12541040 caagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtagaaggaatgggtcacc 12540941  T
142 aattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttgaagagagaa 234  Q
     ||||||||||||||||||||| |||| | |||  ||  |||| | |||||| ||||||||||| ||| |||| ||||| ||||| |||||||    
12540940 cattcatatgggttgttcctgagaagagagggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaa 12540848  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 12641353 - 12641494
Alignment:
93 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagcatgacaatgaag 192  Q
    |||||||||||||| ||||||||| |||| || |||   ||  ||||||||||  |||||||||||||||| |||||| |||   |  |||| | |||||    
12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag 12641452  T
193 aggagaaagaaaaatggttgccaaaggggtttgaagagagaa 234  Q
    ||||||||||||| |||||||| || || || ||||||||||    
12641453 aggagaaagaaaagtggttgcctaaaggattcgaagagagaa 12641494  T

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