View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15432_high_1_N (Length: 565)
Name: NF15432_high_1_N
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15432_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 21 - 546
Target Start/End: Original strand, 52511842 - 52512387
Alignment:
| Q |
21 |
tagtatacataccttctaagaatttggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt |
120 |
Q |
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| T |
52511842 |
tagtatacataccttctaagaattgggaagtaggcgtccattatacatcttatcaagcagtttctttgcgtcaggcctcctgagaagacctttattgttt |
52511941 |
T |
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| Q |
121 |
ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatctgtcaatttagtcgtttactaagnnnnnnnngaaatgagcaa |
220 |
Q |
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| T |
52511942 |
ggcacaccagttcctaaacaaacagggcagacaagctttcctcgacctacggaaaatcagtcaatttagtcgtttactaag-aaaaaaagaaatgagcaa |
52512040 |
T |
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| Q |
221 |
agtagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtacca |
320 |
Q |
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| T |
52512041 |
attagaagaatgaatgataccataacaattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttccattttcctgtacca |
52512140 |
T |
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| Q |
321 |
ccacacatatcacct----------aaatgaaaagtagtattataataaggaagaagaatattattat-----------taaaaaagaatgaggagaaaa |
399 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||| ||||||| |
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| T |
52512141 |
ccacacatatcacctaaatgaaatgaaatgaaaagtagtattataataaggaagaatattattattattattattattataacaaagaatgaagagaaaa |
52512240 |
T |
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| Q |
400 |
gagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512241 |
gagaagaggactcacaaatgatgttaccacttccaccacaatttctgcaaccaggaggcttatcaagagcggttgctgctgagttggttgcattaattaa |
52512340 |
T |
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| Q |
500 |
aaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
546 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512341 |
aaatggagttgaacacaaacatttaagacattgacgcctcgaaacaa |
52512387 |
T |
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