View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15432_high_2 (Length: 543)
Name: NF15432_high_2
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15432_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 495
Target Start/End: Complemental strand, 39384064 - 39383590
Alignment:
| Q |
21 |
atcatcaaatcaaatcaaaagagcgttttcaagacttttattcttcataatgaacttttgttctcactttgtagatagaagttacataactttttcctat |
120 |
Q |
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| T |
39384064 |
atcatcaaatcaaatcaaaagagcgttttcaagacttttattcttcataatgaacatttgttctcactttgtagatagaagttacataactttttcctat |
39383965 |
T |
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| Q |
121 |
atactagaatctggatgatacaaaatggaaaacaatcatcaaatcaaacacatttagaactagaaaaggnnnnnnntcatcatggggctaagagtttcga |
220 |
Q |
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| T |
39383964 |
atactagaatctggatgatacaaaatggaaaacaatcatcaaatcaaagacatttagaactagaaaaggaaaaaaatcatcatggggctaagagtttcga |
39383865 |
T |
|
| Q |
221 |
atcatctaatacccattagagattgatttgggtgttgaggtgaaaacaaaaggtcccacggtatacaaattcatcttattgtcatggaggaagtgatagg |
320 |
Q |
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| T |
39383864 |
atcatctaatacccattagagattgatttgggtgttgaggtgaaaacaaaaggtcccacggtatacaaattcatcttattgtcatggaggaagtgatagg |
39383765 |
T |
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| Q |
321 |
aatgaagttcagcaccactaattcctttgttaaaatcagtgggatagttgcagttgttcaaaggagaagcttcaaggaataccctacattccttcagcac |
420 |
Q |
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| T |
39383764 |
aatgaagttcagcaccactaattcctttgttaaaatcagtgggatagttgcagttgttcaaaggagaagcttcaaggaataccctacactccttcagcac |
39383665 |
T |
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| Q |
421 |
ccgtttttctgcaaccagttcttgttgaaacaatgttgcaaggaaatagccctttgcattggttgcatcatttaa |
495 |
Q |
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| T |
39383664 |
ccgtttttctgcaaccagttcttgttgaaacaatgttgcaaggaaatagccctttgcattggttgcatcatttaa |
39383590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 39384160 - 39384051
Alignment:
| Q |
56 |
ttttattcttcataatgaacttttgt---tctcactttgtagatagaagttacataactttttcctatatactagaatctggatgatacaaaatggaaaa |
152 |
Q |
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|||||||||||||||||| |||| | |||||||| |||||||||||||| |||||||||||||||| | | |||||| |||||||||||| |
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| T |
39384160 |
ttttattcttcataatgatattttttctctctcacttataagatagaagttacagaactttttcctatatatt------tagatgatgcaaaatggaaaa |
39384067 |
T |
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| Q |
153 |
caatcatcaaatcaaa |
168 |
Q |
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|||||||||||||||| |
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| T |
39384066 |
caatcatcaaatcaaa |
39384051 |
T |
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