View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15432_high_22 (Length: 308)
Name: NF15432_high_22
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15432_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 37347289 - 37346992
Alignment:
| Q |
1 |
aaataatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttgaaatattcag |
100 |
Q |
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| T |
37347289 |
aaataatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttatagacaaattcacttttgaaatattcag |
37347190 |
T |
|
| Q |
101 |
gacagacaaacccaacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggtaaacatgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37347189 |
gacagacaaacccaacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggtaaacatgttc |
37347090 |
T |
|
| Q |
201 |
agcgattctggaacattctttgtcatagaaagctaacctgtctcttgtgaactgaaactctgaaccagtgattgaacctcttcctcttggtgtctctg |
298 |
Q |
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| T |
37347089 |
agcgattctggaacattctttgtcatagaaagctaacctgtctcttgtgaactgaaactctgaaccagtgattgaacctcttcctcttggtgtctctg |
37346992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 39220115 - 39219862
Alignment:
| Q |
4 |
taatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttgaaatattcaggac |
103 |
Q |
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|||||||| |||||||| | |||||||||||||||||| |||||||| |||||||||||||| ||||| || |||| |||||||||||||| || |||| |
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| T |
39220115 |
taatcaaacacatcatagagaatacttgttatatcttcagttggactgtcctgcaaccaaagtgttttgtactcaaaatcacttttgaaatactcgggac |
39220016 |
T |
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| Q |
104 |
agacaaacccaacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggtaaacatgttcagc |
203 |
Q |
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| T |
39220015 |
aaacaaaaccaacacagttaagcacatgtgttattcctttttctctgagaagttcatggtttttggccactgtgtcacttcccaagtaaatatgttcagc |
39219916 |
T |
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| Q |
204 |
gattctggaacattctttgtcatagaaagctaacctgtctcttgtgaactgaaa |
257 |
Q |
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||||| ||||| ||||||||| |||||||||| | |||||| |||||||||| |
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| T |
39219915 |
aattcttgaacactctttgtcaaagaaagctaatttatctcttttgaactgaaa |
39219862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 7599236 - 7599096
Alignment:
| Q |
4 |
taatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttgaaatattcaggac |
103 |
Q |
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|
|||||||| ||||||||||| ||||| || ||||| || | ||||| || || ||||| | ||| |||| ||||| |||| ||| ||||| ||||||| |
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| T |
7599236 |
taatcaaacacatcatacaatatactagtaatatcctcactaggactgtcttgtaaccacaaagtcctatacacaaaatcacctttaaaatactcaggac |
7599137 |
T |
|
| Q |
104 |
agacaaacccaacacaattaagcacgtgagtaatcccattc |
144 |
Q |
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| T |
7599136 |
acacaaaaccaacacaattcaaaacatgagtaatcccattc |
7599096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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