View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15432_high_23 (Length: 304)

Name: NF15432_high_23
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15432_high_23
NF15432_high_23
[»] scaffold0091 (3 HSPs)
scaffold0091 (186-304)||(28876-28994)
scaffold0091 (9-122)||(29058-29172)
scaffold0091 (201-304)||(24679-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (9-122)||(14378-14492)
scaffold0218 (186-302)||(14198-14314)
[»] chr3 (10 HSPs)
chr3 (9-120)||(16642300-16642412)
chr3 (9-121)||(4712800-4712913)
chr3 (199-304)||(16642092-16642197)
chr3 (9-122)||(14062778-14062892)
chr3 (199-304)||(4712995-4713100)
chr3 (9-122)||(14055037-14055151)
chr3 (200-304)||(14055221-14055325)
chr3 (19-119)||(13926858-13926960)
chr3 (199-267)||(14062981-14063049)
chr3 (230-304)||(14481808-14481882)
[»] chr6 (4 HSPs)
chr6 (9-122)||(14989375-14989489)
chr6 (9-121)||(14980263-14980376)
chr6 (199-304)||(14980458-14980563)
chr6 (86-122)||(10906902-10906938)
[»] chr1 (5 HSPs)
chr1 (9-122)||(51658662-51658776)
chr1 (16-122)||(13882243-13882350)
chr1 (199-304)||(13882462-13882567)
chr1 (202-301)||(51658854-51658953)
chr1 (15-108)||(1567069-1567166)
[»] chr7 (8 HSPs)
chr7 (186-302)||(16060335-16060449)
chr7 (9-122)||(48376788-48376902)
chr7 (9-122)||(16060513-16060627)
chr7 (200-304)||(9080165-9080269)
chr7 (211-304)||(48376596-48376689)
chr7 (211-304)||(16069015-16069108)
chr7 (19-122)||(4531759-4531864)
chr7 (86-122)||(9080339-9080375)
[»] scaffold0063 (2 HSPs)
scaffold0063 (186-304)||(28443-28559)
scaffold0063 (85-122)||(28342-28379)
[»] scaffold0003 (2 HSPs)
scaffold0003 (199-304)||(130592-130697)
scaffold0003 (49-122)||(130796-130870)
[»] chr8 (7 HSPs)
chr8 (212-304)||(23657607-23657699)
chr8 (212-304)||(23658382-23658474)
chr8 (9-122)||(23658527-23658649)
chr8 (211-304)||(17862251-17862344)
chr8 (9-66)||(23657827-23657884)
chr8 (68-122)||(23657752-23657807)
chr8 (19-54)||(29293929-29293964)
[»] scaffold0061 (1 HSPs)
scaffold0061 (199-304)||(18097-18202)
[»] scaffold1269 (1 HSPs)
scaffold1269 (9-100)||(1-93)
[»] scaffold1043 (1 HSPs)
scaffold1043 (211-304)||(1432-1525)
[»] chr2 (2 HSPs)
chr2 (211-304)||(23907746-23907839)
chr2 (19-122)||(23656470-23656575)
[»] chr4 (2 HSPs)
chr4 (216-304)||(19728457-19728545)
chr4 (33-102)||(3576240-3576311)
[»] scaffold0319 (1 HSPs)
scaffold0319 (9-77)||(13570-13638)
[»] chr5 (3 HSPs)
chr5 (216-304)||(24832209-24832297)
chr5 (211-268)||(25756788-25756845)
chr5 (211-268)||(25790956-25791013)
[»] scaffold0170 (1 HSPs)
scaffold0170 (211-304)||(17208-17301)
[»] scaffold0010 (1 HSPs)
scaffold0010 (232-304)||(142201-142273)


Alignment Details
Target: scaffold0091 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 28994 - 28876
Alignment:
186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagat 285  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagaa 28895  T
286 tgacgatgttgacttatga 304  Q
    |||||||||||||||||||    
28894 tgacgatgttgacttatga 28876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 29172 - 29058
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
29172 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 29073  T
108 tgttagtgatgatga 122  Q
    |||||||||||||||    
29072 tgttagtgatgatga 29058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 24782 - 24679
Alignment:
201 atatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgactt 300  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagaatgacgatgttgactt 24683  T
301 atga 304  Q
    ||||    
24682 atga 24679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 14492 - 14378
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
14492 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14393  T
108 tgttagtgatgatga 122  Q
    |||||||||||||||    
14392 tgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 14314 - 14198
Alignment:
186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagat 285  Q
    |||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||     
14314 gggtggtgtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtctaatatacattgatgatgagaa 14215  T
286 tgacgatgttgacttat 302  Q
    |||||||||| ||||||    
14214 tgacgatgtttacttat 14198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 16642412 - 16642300
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
16642412 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 16642313  T
108 tgttagtgatgat 120  Q
    |||||||||||||    
16642312 tgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4712800 - 4712913
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
4712800 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 4712899  T
108 tgttagtgatgatg 121  Q
    ||||||||||||||    
4712900 tgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 16642197 - 16642092
Alignment:
199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgac 298  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
16642197 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagaatgacgatgttgac 16642098  T
299 ttatga 304  Q
    ||||||    
16642097 ttatga 16642092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 14062778 - 14062892
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
14062778 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14062877  T
108 tgttagtgatgatga 122  Q
    ||||||| |||||||    
14062878 tgttagttatgatga 14062892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 4712995 - 4713100
Alignment:
199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgac 298  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
4712995 atatatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtctaatatacattgatgatgagaatgacgatgttgac 4713094  T
299 ttatga 304  Q
    ||||||    
4713095 ttatga 4713100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 14055037 - 14055151
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
14055037 gagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14055136  T
108 tgttagtgatgatga 122  Q
    |||||||||| ||||    
14055137 tgttagtgataatga 14055151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 200 - 304
Target Start/End: Original strand, 14055221 - 14055325
Alignment:
200 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgact 299  Q
    |||||| ||| |||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  ||||| |||    
14055221 tatatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtctaatatacattgatgatgagaatgaaaatgtttact 14055320  T
300 tatga 304  Q
    |||||    
14055321 tatga 14055325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
19 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
117 tga 119  Q
    |||    
13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 14062981 - 14063049
Alignment:
199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaat 267  Q
    ||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
14062981 atatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaat 14063049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 14481808 - 14481882
Alignment:
230 gtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||||||||||||||||| |||||||||| |  |||||||||||||||||||||| ||||||||||  |||||||    
14481808 gtataattatgatgatgatttgaatgatgattcctaatatacattgatgatgagaatgacgatgtttgcttatga 14481882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 14989375 - 14989489
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
14989375 gagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14989474  T
108 tgttagtgatgatga 122  Q
    |||||||||||||||    
14989475 tgttagtgatgatga 14989489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 14980263 - 14980376
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
14980263 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14980362  T
108 tgttagtgatgatg 121  Q
    ||||||||||||||    
14980363 tgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 14980458 - 14980563
Alignment:
199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgac 298  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
14980458 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagaatgacgatgttgac 14980557  T
299 ttatga 304  Q
    ||||||    
14980558 ttatga 14980563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 10906902 - 10906938
Alignment:
86 atgagaaatgataatgtttatatgttagtgatgatga 122  Q
    ||||||||||||||||||||||| |||||||||||||    
10906902 atgagaaatgataatgtttatattttagtgatgatga 10906938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 51658662 - 51658776
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
51658662 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttata 51658761  T
108 tgttagtgatgatga 122  Q
    |||||||||||||||    
51658762 tgttagtgatgatga 51658776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 13882243 - 13882350
Alignment:
16 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 114  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
115 gatgatga 122  Q
    ||||||||    
13882343 gatgatga 13882350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 13882462 - 13882567
Alignment:
199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgac 298  Q
    ||||||| |||  ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
13882462 atatatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagaatgacgatgttgac 13882561  T
299 ttatga 304  Q
    ||||||    
13882562 ttatga 13882567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 51658854 - 51658953
Alignment:
202 tatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgactta 301  Q
    |||| ||| |||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||||||| |||||    
51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgatatctaatatacattgatgatgagaatgacgatgtttactta 51658953  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
15 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 108  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

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Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 16060449 - 16060335
Alignment:
186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagat 285  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
16060449 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagaa 16060352  T
286 tgacgatgttgacttat 302  Q
    |||||||||||||||||    
16060351 tgacgatgttgacttat 16060335  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 48376902 - 48376788
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
48376902 gagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 48376803  T
108 tgttagtgatgatga 122  Q
    ||||| |||||||||    
48376802 tgttattgatgatga 48376788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 16060627 - 16060513
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 107  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||    
16060627 gagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttata 16060528  T
108 tgttagtgatgatga 122  Q
    |||||||||||||||    
16060527 tgttagtgatgatga 16060513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 304
Target Start/End: Complemental strand, 9080269 - 9080165
Alignment:
200 tatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgact 299  Q
    |||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
9080269 tatatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagaatgacgatgtttact 9080170  T
300 tatga 304  Q
    |||||    
9080169 tatga 9080165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 48376689 - 48376596
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtctaatatacattgatgatgagaatgacgatgtttacttatga 48376596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 16069015 - 16069108
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||| ||||||||    
16069015 tgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtctaatatacattgatgacgagaatgacgatgtttacttatga 16069108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 4531759 - 4531864
Alignment:
19 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
117 tgatga 122  Q
    ||||||    
4531859 tgatga 4531864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 9080375 - 9080339
Alignment:
86 atgagaaatgataatgtttatatgttagtgatgatga 122  Q
    |||||||||||||||||||||||||||||||||||||    
9080375 atgagaaatgataatgtttatatgttagtgatgatga 9080339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 186 - 304
Target Start/End: Original strand, 28443 - 28559
Alignment:
186 gggtggtgtgtaaatatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagat 285  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
28443 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtctaatatacattgatgatgagaa 28540  T
286 tgacgatgttgacttatga 304  Q
    |||||||||||||||||||    
28541 tgacgatgttgacttatga 28559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 28342 - 28379
Alignment:
85 gatgagaaatgataatgtttatatgttagtgatgatga 122  Q
    ||||||||||||| ||||||||||||||||||||||||    
28342 gatgagaaatgatgatgtttatatgttagtgatgatga 28379  T

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Target: scaffold0003 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 130697 - 130592
Alignment:
199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgac 298  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
130697 atatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatggtgagaatgacgatgttgac 130598  T
299 ttatga 304  Q
    ||||||    
130597 ttatga 130592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 130870 - 130796
Alignment:
49 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 122  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 130796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 23657699 - 23657607
Alignment:
212 gactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgaaaatgacgatgttgacttatga 23657607  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 23658474 - 23658382
Alignment:
212 gactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgaaaatgacgatgttgacttatga 23658382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 23658649 - 23658527
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgataa 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| ||||    
23658649 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattataa 23658550  T
100 tgtttatatgttagtgatgatga 122  Q
    |||||||||||||||||||||||    
23658549 tgtttatatgttagtgatgatga 23658527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 17862251 - 17862344
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||| ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
17862251 tgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtctaatatacattgatgatgagaatgacgatgtttacttatga 17862344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 23657884 - 23657827
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatata 66  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
23657884 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatata 23657827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 23657807 - 23657752
Alignment:
68 atgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatga 122  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
23657807 atgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatga 23657752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
19 atgaggaatacataatgtgacgaagagtgatgacga 54  Q
    ||||||||| ||||||||||||||||||||||||||    
29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 18097 - 18202
Alignment:
199 atatatacatactgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgac 298  Q
    ||||||| ||| ||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||    
18097 atatatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatggtatctaatatacattgatgatgagaatgacgatgttaac 18196  T
299 ttatga 304  Q
    ||||||    
18197 ttatga 18202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 93 - 1
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 100  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
93 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 1432 - 1525
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
1432 tgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtctaatatacattgatgatgagaatgacgatgtttacttatga 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 23907839 - 23907746
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||| |||||||||| |||||||| |||||||||| | |||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||    
23907839 tgacgatgagaatgatgacgtatatttatgatgataatttgaatgatgatgtataatatacattgatgatgagaatgacgatgtttacttatga 23907746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 23656470 - 23656575
Alignment:
19 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 116  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
117 tgatga 122  Q
    | ||||    
23656570 taatga 23656575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 19728457 - 19728545
Alignment:
216 atgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    ||||||||||  | |||||||||||||||||| |||||||||| |||||||||||||||||||||||||  ||||||||| ||||||||    
19728457 atgagaatgataaagtataattatgatgatgatttgaatgatgatgtctaatatacattgatgatgagaacgacgatgtttacttatga 19728545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
33 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 102  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 13570 - 13638
Alignment:
9 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 77  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
13570 gagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 24832209 - 24832297
Alignment:
216 atgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||||||||| || |||||||||||||||||| |||||||||| |  |||||||||||||||||||||| ||||||||||  |||||||    
24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgattcctaatatacattgatgatgagaatgacgatgtttgcttatga 24832297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 25756788 - 25756845
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaata 268  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
25756788 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcaaata 25756845  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 25791013 - 25790956
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaata 268  Q
    |||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
25791013 tgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcgaata 25790956  T

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Target: scaffold0170 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 17301 - 17208
Alignment:
211 tgactatgagaatgaagacgtataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||| |||||||||| | |||||| |||||||||| | |||||||||| ||| |||||||||||||||||||||  ||||||||| ||||||||    
17301 tgacgatgagaatgatggcgtatatttatgatgataatttgaatgatgatgtataatatacattgatgatgagaacgacgatgtttacttatga 17208  T

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Target: scaffold0010 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 142273 - 142201
Alignment:
232 ataattatgatgatgacttgaatgatggtgtctaatatacattgatgatgagattgacgatgttgacttatga 304  Q
    |||||||||||||||| || ||||||| |||||||| |||||||||||||||| |||||||||| ||||||||    
142273 ataattatgatgatgatttaaatgatgatgtctaatttacattgatgatgagaatgacgatgtttacttatga 142201  T

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