View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15432_high_3 (Length: 540)

Name: NF15432_high_3
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15432_high_3
NF15432_high_3
[»] chr2 (17 HSPs)
chr2 (175-369)||(4730682-4730876)
chr2 (175-363)||(35243106-35243295)
chr2 (23-173)||(4730827-4730978)
chr2 (51-136)||(18481913-18481999)
chr2 (93-173)||(35243246-35243326)
chr2 (51-136)||(5136347-5136433)
chr2 (355-416)||(4730610-4730671)
chr2 (50-136)||(39711494-39711582)
chr2 (302-352)||(12419537-12419587)
chr2 (302-352)||(12431597-12431647)
chr2 (300-363)||(20105337-20105402)
chr2 (326-363)||(39711724-39711761)
chr2 (301-349)||(39228901-39228949)
chr2 (301-352)||(5136187-5136238)
chr2 (302-349)||(9848112-9848159)
chr2 (301-352)||(18482108-18482159)
chr2 (313-346)||(38002026-38002059)
[»] scaffold0174 (3 HSPs)
scaffold0174 (175-369)||(30562-30756)
scaffold0174 (23-173)||(30707-30858)
scaffold0174 (354-416)||(30490-30552)
[»] chr1 (14 HSPs)
chr1 (175-369)||(2688318-2688512)
chr1 (23-173)||(2688216-2688367)
chr1 (51-133)||(23777098-23777179)
chr1 (352-401)||(2688520-2688569)
chr1 (219-349)||(48563257-48563388)
chr1 (51-133)||(18628876-18628959)
chr1 (51-134)||(11871482-11871566)
chr1 (302-349)||(50959523-50959570)
chr1 (54-104)||(14167771-14167821)
chr1 (313-343)||(19757765-19757795)
chr1 (319-349)||(29013825-29013855)
chr1 (28-104)||(33323984-33324062)
chr1 (51-104)||(15309133-15309186)
chr1 (51-104)||(19757844-19757897)
[»] chr4 (14 HSPs)
chr4 (51-137)||(38011456-38011545)
chr4 (219-349)||(38011576-38011707)
chr4 (323-375)||(21481176-21481228)
chr4 (51-136)||(44311640-44311727)
chr4 (86-135)||(1745573-1745622)
chr4 (51-104)||(5383822-5383875)
chr4 (28-134)||(18402661-18402770)
chr4 (51-123)||(44206907-44206978)
chr4 (301-349)||(1745438-1745486)
chr4 (219-267)||(22065671-22065718)
chr4 (51-90)||(21081664-21081703)
chr4 (51-136)||(29847729-29847816)
chr4 (51-104)||(44136898-44136952)
chr4 (51-136)||(20650157-20650245)
[»] chr3 (6 HSPs)
chr3 (51-136)||(24405199-24405285)
chr3 (82-138)||(51537524-51537581)
chr3 (301-367)||(28159065-28159130)
chr3 (313-367)||(28180530-28180583)
chr3 (80-135)||(17766024-17766080)
chr3 (80-135)||(19067344-19067400)
[»] chr5 (5 HSPs)
chr5 (53-136)||(19932329-19932414)
chr5 (51-137)||(43168549-43168636)
chr5 (296-363)||(24099420-24099486)
chr5 (54-110)||(2770890-2770947)
chr5 (219-263)||(43168667-43168711)
[»] chr7 (12 HSPs)
chr7 (304-352)||(10623350-10623398)
chr7 (296-349)||(10019743-10019796)
chr7 (44-124)||(27900127-27900208)
chr7 (315-356)||(28302166-28302207)
chr7 (28-136)||(10623511-10623622)
chr7 (219-265)||(10623433-10623479)
chr7 (52-136)||(20118169-20118254)
chr7 (309-346)||(5907018-5907055)
chr7 (51-104)||(11203218-11203271)
chr7 (51-136)||(28002808-28002894)
chr7 (52-136)||(9957261-9957348)
chr7 (313-349)||(27900348-27900384)
[»] chr6 (8 HSPs)
chr6 (52-136)||(31946347-31946434)
chr6 (87-136)||(3008682-3008731)
chr6 (313-349)||(29032701-29032737)
chr6 (302-349)||(8210013-8210060)
chr6 (321-375)||(17459206-17459258)
chr6 (55-136)||(32718098-32718181)
chr6 (42-136)||(6189817-6189910)
chr6 (42-136)||(30625572-30625668)
[»] chr8 (6 HSPs)
chr8 (302-347)||(1029736-1029781)
chr8 (54-136)||(41566347-41566432)
chr8 (302-349)||(41566184-41566231)
chr8 (52-136)||(1029533-1029620)
chr8 (53-104)||(10659105-10659157)
chr8 (301-349)||(11954595-11954643)
[»] scaffold0756 (1 HSPs)
scaffold0756 (318-349)||(4094-4125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (302-367)||(353236-353297)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 175 - 369
Target Start/End: Complemental strand, 4730876 - 4730682
Alignment:
Q  175 gctctttcgagcacgaggaactagagtgtaagcggacaagttgccttgaagcctgcagatctcaatagatctggaatcatcagagagtcaagcgtacacg 274  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |    
T  4730876 gctctttcgagcacgaggaaccagagtgtaagcgaacaagttgccttgaaacctgcagatctcaacaaatctggaatcatcagagagtcaagcgtacatg 4730777  T
Q  275 ccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagttta 369  Q
    |||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4730776 ccaccaaacacaacaagttacaatctgacgcgttagaactcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgggttta 4730682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 175 - 363
Target Start/End: Complemental strand, 35243295 - 35243106
Alignment:
Q  175 gctctttcgagcacgaggaactagagtgtaagcggacaagttgccttgaagcctgcagatctcaatagatctggaatcatcagagagt-caagcgtacac 273  Q
    ||||||||||||||||  ||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||  |||     
T  35243295 gctctttcgagcacgacaaaccaaagtgtaagcggacaagttgccttgaagcctgtagatctcaacagatctggaaacatcagagagtccaagcagacat 35243196  T
Q  274 gccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcg 363  Q
    ||||||||||||||||||||| |||| || | |||| || |||||||| |||||||||||| |||| |||||||||||||||||||||||    
T  35243195 gccaccaaacacaacaagttacaatctgatgtgttacatatcagatcgagggatgagtccattacgctagtaaccaaacagaccctttcg 35243106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 4730978 - 4730827
Alignment:
Q  23 tcatcaagaacaattaggatt-aattttagcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcata 121  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||||||     
T  4730978 tcatcaagaacaattaagatttaattttagcgaatggattgaccgccaacaccgtaacaaatccaagtgccgacaactccctgcacaagcagcaagcatt 4730879  T
Q  122 aagctctttcgagcacgaggaactagactgtaagtggacaagttgccttgaa 173  Q
    ||||||||||||||||||||||| ||| |||||| | |||||||||||||||    
T  4730878 aagctctttcgagcacgaggaaccagagtgtaagcgaacaagttgccttgaa 4730827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 18481913 - 18481999
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcgagca 136  Q
    |||||||||| ||||| |||||||||||| |||||||||| ||||||||||||  ||||||||||||| | ||||||||||||||||    
T  18481913 gcgaatggatcgaccgccaacacggtaacgaatccaagtgccaacaactccctaaacaagcagcaagcgtaaaagctctttcgagca 18481999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 35243326 - 35243246
Alignment:
Q  93 aacaactccctgcacaagcagcaagcataaagctctttcgagcacgaggaactagactgtaagtggacaagttgccttgaa 173  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||  ||| | | |||||| |||||||||||||||||    
T  35243326 aacaaatccctgcacaagcagcatgcatagagctctttcgagcacgacaaaccaaagtgtaagcggacaagttgccttgaa 35243246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 5136433 - 5136347
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcgagca 136  Q
    |||||||||| |||||  | ||||||||| |||||||||| ||||| ||||||| ||||||||||||| | ||||||||||||||||    
T  5136433 gcgaatggatcgaccgctagcacggtaacgaatccaagtgccaacagctccctgaacaagcagcaagcgtgaaagctctttcgagca 5136347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 4730671 - 4730610
Alignment:
Q  355 accctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 416  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  4730671 accctttcgggattatgaaaccaaagcaaaaggtcaagtctgcacccatcaatctcagctct 4730610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 39711494 - 39711582
Alignment:
Q  50 agcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctgcac-aagcagcaagcataaagctctttcgagca 136  Q
    ||||||||||| ||||| |||||||||||| ||||||||||| ||||| ||| ||| || |||||||||||||||| ||||||| ||||    
T  39711494 agcgaatggatagaccgccaacacggtaacaaaatccaagtgccaacagctctctgaacaaagcagcaagcataaaactctttcaagca 39711582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 12419537 - 12419587
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 352  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12419537 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12419587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 12431597 - 12431647
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 352  Q
    |||||| ||| ||||||||  ||||||||||||||||||||||||||||||    
T  12431597 acgcgtaagaactcagatctagggatgagtccaatacgttagtaaccaaac 12431647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 20105402 - 20105337
Alignment:
Q  300 cgacgcgttagatctcagatcgtgggatgagtccaatacgtt--agtaaccaaacagaccctttcg 363  Q
    |||||||| ||| ||||||||| | |||||||||||||||||  ||||||||| ||||||||||||    
T  20105402 cgacgcgtaagaactcagatcgagtgatgagtccaatacgttaaagtaaccaatcagaccctttcg 20105337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 39711724 - 39711761
Alignment:
Q  326 atgagtccaatacgttagtaaccaaacagaccctttcg 363  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39711724 atgagttcaatacgttagtaaccaaacagaccctttcg 39711761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 39228949 - 39228901
Alignment:
Q  301 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    ||||||| ||| ||||||||| |||||||||| ||||||||||||||||    
T  39228949 gacgcgtaagaactcagatcgagggatgagtcgaatacgttagtaacca 39228901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 352
Target Start/End: Complemental strand, 5136238 - 5136187
Alignment:
Q  301 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 352  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| || ||||||    
T  5136238 gacgcgtaagaactcagatcgagggatgagtccaatacgttaatagccaaac 5136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 9848159 - 9848112
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  9848159 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 9848112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 18482108 - 18482159
Alignment:
Q  301 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 352  Q
    ||||||| ||| ||||||||| ||||||||||||||| |||| |||||||||    
T  18482108 gacgcgtaagaactcagatcgagggatgagtccaatatgttaataaccaaac 18482159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 38002059 - 38002026
Alignment:
Q  313 ctcagatcgtgggatgagtccaatacgttagtaa 346  Q
    ||||||||| ||||||||||||||||||||||||    
T  38002059 ctcagatcgagggatgagtccaatacgttagtaa 38002026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 175 - 369
Target Start/End: Complemental strand, 30756 - 30562
Alignment:
Q  175 gctctttcgagcacgaggaactagagtgtaagcggacaagttgccttgaagcctgcagatctcaatagatctggaatcatcagagagtcaagcgtacacg 274  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  30756 gctctttcgagcacgaggaaccaaagtgtaagcggacaagttgccttgaagcctgcagatctcaacagatctggaatcatcagagagtcaagcctgcacg 30657  T
Q  275 ccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagttta 369  Q
    | |||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30656 caaccaaacacaacaagttacaatctgacgcgttagaactcatatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgggttta 30562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 30858 - 30707
Alignment:
Q  23 tcatcaagaacaattaggatt-aattttagcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcata 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30858 tcatcaagaacaattaggatttaattttagcgaatggattgaccgtcaacacggtaacaaatccaagtgccaacaactccctgcacaagcagcaagcata 30759  T
Q  122 aagctctttcgagcacgaggaactagactgtaagtggacaagttgccttgaa 173  Q
    ||||||||||||||||||||||| | | |||||| |||||||||||||||||    
T  30758 aagctctttcgagcacgaggaaccaaagtgtaagcggacaagttgccttgaa 30707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 30552 - 30490
Alignment:
Q  354 gaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcacccaccaatctcagctct 416  Q
    |||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  30552 gaccctttcgggtttatgaaaccaacgcaaaaggtcaagtctgcacccaccaatctcagctct 30490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 175 - 369
Target Start/End: Original strand, 2688318 - 2688512
Alignment:
Q  175 gctctttcgagcacgaggaactagagtgtaagcggacaagttgccttgaagcctgcagatctcaatagatctggaatcatcagagagtcaagcgtacacg 274  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||  ||||     
T  2688318 gctctttctagcacgaggaacgagagtgtaagcggacaagttgccttgaagtctgtagatctcaacagatctggaatcatcaaagagtcaagcacacaca 2688417  T
Q  275 ccaccaaacacaacaagttataatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagttta 369  Q
    |||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  2688418 ccaccaaacacaacaagttacaatctgatgcgttagaactcagatcgtgggatgagtccaatacgttagtaaccaaacagactctttcgggttta 2688512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 2688216 - 2688367
Alignment:
Q  23 tcatcaagaacaattaggatt-aattttagcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcata 121  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  2688216 tcatcaagaacaattaggatttaattttagcgaatggattgaccgccaacacggtaacaaatccaagcgccaacaactccctgcacaagcagcaagcata 2688315  T
Q  122 aagctctttcgagcacgaggaactagactgtaagtggacaagttgccttgaa 173  Q
    |||||||||| |||||||||||| ||| |||||| |||||||||||||||||    
T  2688316 aagctctttctagcacgaggaacgagagtgtaagcggacaagttgccttgaa 2688367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 23777179 - 23777098
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcataaagctctttcga 133  Q
    |||||||||| ||||| ||||||||||  ||||||||||| ||||| ||||||| |||| |||||||||||||| ||||||||    
T  23777179 gcgaatggatcgaccgccaacacggtacaaaatccaagtgccaacagctccctgaacaa-cagcaagcataaagttctttcga 23777098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 2688520 - 2688569
Alignment:
Q  352 cagaccctttcgagtttatgaaacgaaagcaaaaggtcaagactgcaccc 401  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2688520 cagaccctttcgggtttatgaaaccaaagcaaaaggtcaagactgcaccc 2688569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 349
Target Start/End: Complemental strand, 48563388 - 48563257
Alignment:
Q  219 cttgaagcctgcagatctcaatagatctggaatcatcagagagtcaagcgta--cacgccaccaaacacaacaagttataatccgacgcgttagatctca 316  Q
    |||||| |||||||||||||| ||| |||||| || |||||||||||  |||  || || |||||||||||| || |  || |  |||||| ||| || |    
T  48563388 cttgaaacctgcagatctcaacagacctggaaacaacagagagtcaaa-gtagtcaagcaaccaaacacaactagattcaaacatacgcgtaagaactta 48563290  T
Q  317 gatcgtgggatgagtccaatacgttagtaacca 349  Q
    ||||||||||||||||||||| |||||||||||    
T  48563289 gatcgtgggatgagtccaatatgttagtaacca 48563257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 18628876 - 18628959
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcga 133  Q
    |||||||||| ||||| |||||||||||| ||||||||||| ||||| ||||||| |||| || ||||||| |||||||||||||    
T  18628876 gcgaatggatcgaccgccaacacggtaacaaaatccaagtgccaacagctccctgaacaa-caacaagcataaaagctctttcga 18628959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 11871566 - 11871482
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcgag 134  Q
    |||||||||| |||||  |||||||||||||| |||||||| ||||||||||||| |||| || |||| || ||||||||||||||    
T  11871566 gcgaatggatcgaccgctaacacggtaacaaaatccaagtgccaacaactccctgaacaa-catcaagaataaaagctctttcgag 11871482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 50959523 - 50959570
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    |||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  50959523 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaacca 50959570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 14167771 - 14167821
Alignment:
Q  54 aatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctg 104  Q
    ||||||| |||||  ||||||||| |||||||||||| |||||||||||||    
T  14167771 aatggatcgaccgctaacacggtatcaaatccaagtgccaacaactccctg 14167821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 19757795 - 19757765
Alignment:
Q  313 ctcagatcgtgggatgagtccaatacgttag 343  Q
    |||||||||||||||||||||||||||||||    
T  19757795 ctcagatcgtgggatgagtccaatacgttag 19757765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 349
Target Start/End: Original strand, 29013825 - 29013855
Alignment:
Q  319 tcgtgggatgagtccaatacgttagtaacca 349  Q
    |||||||||||||||||||||||||||||||    
T  29013825 tcgtgggatgagtccaatacgttagtaacca 29013855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 33324062 - 33323984
Alignment:
Q  28 aagaacaattag-gattaattttagcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctg 104  Q
    |||||||||||| | |||||| | |||||||||| ||||| |||||| ||||| ||||||||||| ||||| |||||||    
T  33324062 aagaacaattagagtttaattatggcgaatggatcgaccgccaacacagtaacgaaatccaagtgccaacagctccctg 33323984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 15309186 - 15309133
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctg 104  Q
    |||||||||| ||||| ||||||||||  ||||||||| | |||||||||||||    
T  15309186 gcgaatggatcgaccgccaacacggtacaaaatccaagcgccaacaactccctg 15309133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 19757897 - 19757844
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctg 104  Q
    |||||||||||||||  |||||||||||||||  |||||| ||||| |||||||    
T  19757897 gcgaatggattgaccaccaacacggtaacaaactcaagtgccaacagctccctg 19757844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 38011456 - 38011545
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctgcac-aagcagcaagcat-aaagctctttcgagcac 137  Q
    |||||||||| ||||| |||||||||||| ||||||||||| ||||| ||||||| || ||||||||||||| |||||||||||||||||    
T  38011456 gcgaatggatcgaccgtcaacacggtaacaaaatccaagtgccaacagctccctgaactaagcagcaagcataaaagctctttcgagcac 38011545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 349
Target Start/End: Original strand, 38011576 - 38011707
Alignment:
Q  219 cttgaagcctgcagatctcaatagatctggaatcatcagagagtc-aagcgtacacgccaccaaacacaacaagttataatccgacgcgttagatctcag 317  Q
    |||||| |||||||||||||| ||| |||||| |||||||||||| ||||   || | ||||||||||||| || |  || || || ||| |||  ||||    
T  38011576 cttgaaacctgcagatctcaacagacctggaaacatcagagagtctaagcaatcaggtcaccaaacacaaccagcttcaaacctacacgtaagaattcag 38011675  T
Q  318 atcgtgggatgagtccaatacgttagtaacca 349  Q
    |||| |||||||||||||||||||||||||||    
T  38011676 atcgagggatgagtccaatacgttagtaacca 38011707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 21481176 - 21481228
Alignment:
Q  323 gggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 375  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  21481176 gggatgagtccaattcgtgagtaaccaaacagaccctttcgagtttttgaaac 21481228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 44311640 - 44311727
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaagcagcaagcataa-agctctttcgagca 136  Q
    |||||||||| ||||| || ||||||| |||| |||||||| || || ||||||| ||||||||||||||||| ||||||||||||||    
T  44311640 gcgaatggatcgaccgccagcacggtatcaaaatccaagtgccatcagctccctgaacaagcagcaagcataagagctctttcgagca 44311727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 1745622 - 1745573
Alignment:
Q  86 aagtggcaacaactccctgcacaagcagcaagcataaagctctttcgagc 135  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||||||    
T  1745622 aagtgccaacagctccctgaacaagcagcaagcataaagctctttcgagc 1745573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 5383875 - 5383822
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctg 104  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||    
T  5383875 gcgaatggatcgaccgccaacacggtaacaaatccaagtgtcaacagctccctg 5383822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 18402661 - 18402770
Alignment:
Q  28 aagaacaatta-ggattaattttagcgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaa-gcagcaagcataaag 124  Q
    ||||||||||| || |||||||   ||||||||| ||||| ||||||  || |||| ||| |||| ||||||||||||| |||| |||||||||||||||    
T  18402661 aagaacaattaaggtttaatttcgacgaatggatcgaccgccaacacaatatcaaactcctagtgacaacaactccctgaacaaagcagcaagcataaag 18402760  T
Q  125 ctctttcgag 134  Q
    ||||||||||    
T  18402761 ctctttcgag 18402770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 44206907 - 44206978
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcataaa 123  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||| ||| |||  ||| |||||||||||||    
T  44206907 gcgaatggatcgaccgccaacacggtaacaaatccaagtgccaacagctctctgatcaa-cagcaagcataaa 44206978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 1745486 - 1745438
Alignment:
Q  301 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||||||    
T  1745486 gacgcgtaagaactcagattgagggatgagtccaatacgttagtaacca 1745438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 22065718 - 22065671
Alignment:
Q  219 cttgaagcctgcagatctcaatagatctggaatcatcagagagtcaagc 267  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||||||    
T  22065718 cttgaagcctgcagatctcaacagacctggaa-catcagagagtcaagc 22065671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 21081703 - 21081664
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtg 90  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  21081703 gcgaatggatcgaccgccaacacggtaacaaatccaagtg 21081664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 29847729 - 29847816
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcaca-agcagcaagcat-aaagctctttcgagca 136  Q
    |||||||||| ||||  |||||||||| |||||||||||| || || ||||||| ||| | |||||||||| |||||| |||||||||    
T  29847729 gcgaatggatcgaccaccaacacggtatcaaatccaagtgccagcagctccctgaacacaccagcaagcataaaagctttttcgagca 29847816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 44136952 - 44136898
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctg 104  Q
    |||||||||||||||| |||||||||||| |||||| |||| ||||| |||||||    
T  44136952 gcgaatggattgaccgccaacacggtaacaaaatcctagtgccaacagctccctg 44136898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 20650245 - 20650157
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcac-aagcagcaagcataa-agctctttcgagca 136  Q
    ||||| |||| ||| | ||||||||||||||| |||||||| ||||| |||||||  | ||||||||||| ||| ||||||||||||||    
T  20650245 gcgaacggatcgactgccaacacggtaacaaaatccaagtgccaacagctccctgagcaaagcagcaagcgtaagagctctttcgagca 20650157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 24405285 - 24405199
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcgagca 136  Q
    |||||||||| ||||  || |||||||||||||||||||| ||||| ||||||| |||||| |||||| | ||||||||||||||||    
T  24405285 gcgaatggatcgacctccagcacggtaacaaatccaagtgccaacagctccctgaacaagcggcaagcgtgaaagctctttcgagca 24405199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 51537524 - 51537581
Alignment:
Q  82 atccaagtggcaacaactccctgcacaa-gcagcaagcataaagctctttcgagcacg 138  Q
    ||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||||||    
T  51537524 atccaagtggcaaaaactccctgaacaaagcagcaagcaaaaagctctttcgagcacg 51537581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 367
Target Start/End: Original strand, 28159065 - 28159130
Alignment:
Q  301 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 367  Q
    |||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||| ||||||| |||||    
T  28159065 gacgtgtttgatctcagatcgagggatgagttcaatatgttagtaaccaaaca-acccttttgagtt 28159130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 28180530 - 28180583
Alignment:
Q  313 ctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 367  Q
    ||||||| | ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  28180530 ctcagattgagggatgagttcaatacgttagtaaccaaaca-acccttttgagtt 28180583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 17766024 - 17766080
Alignment:
Q  80 aaatccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcgagc 135  Q
    ||||||||||| ||||| ||||| | | ||||||||||||| |||||||||||||||    
T  17766024 aaatccaagtgccaacagctcccagaataagcagcaagcataaaagctctttcgagc 17766080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 19067344 - 19067400
Alignment:
Q  80 aaatccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcgagc 135  Q
    ||||||||||| ||||| ||||| | | ||||||||||||| |||||||||||||||    
T  19067344 aaatccaagtgccaacagctcccagaataagcagcaagcataaaagctctttcgagc 19067400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 19932329 - 19932414
Alignment:
Q  53 gaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgcacaa-gcagcaagcat-aaagctctttcgagca 136  Q
    |||||||| ||||| ||||||||||  ||||||||||| ||||| ||||||| |||| ||||||||||| ||||||||||||||||    
T  19932329 gaatggatcgaccgccaacacggtatgaaatccaagtgccaacagctccctgaacaatgcagcaagcataaaagctctttcgagca 19932414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 43168549 - 43168636
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaagcagcaagcataaagctctttcgagcac 137  Q
    ||||||||||  || | |||||||||| |||| | ||| || ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43168549 gcgaatggatcaactgtcaacacggtatcaaaattcaaatgtcaacaactccctgaacaagaagcaagcataaagctctttcgagcac 43168636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 24099486 - 24099420
Alignment:
Q  296 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcg 363  Q
    |||||||||||| | | ||||||||| ||||||||| |||||||||| ||||| ||||||||||||||    
T  24099486 aatccgacgcgtaaaaactcagatcgagggatgagttcaatacgttaataacc-aacagaccctttcg 24099420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 2770890 - 2770947
Alignment:
Q  54 aatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaag 110  Q
    ||||||||||||| |||||||||| |||| |||||||| ||||| |||||||||||||    
T  2770890 aatggattgaccgccaacacggtatcaaaatccaagtgtcaacagctccctgcacaag 2770947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 43168667 - 43168711
Alignment:
Q  219 cttgaagcctgcagatctcaatagatctggaatcatcagagagtc 263  Q
    |||||| |||||||||||||| ||||||| || ||||||||||||    
T  43168667 cttgaaacctgcagatctcaacagatctgcaaacatcagagagtc 43168711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 10623398 - 10623350
Alignment:
Q  304 gcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaac 352  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  10623398 gcgttagaactcagatcgagggatgagtccaatacgttagtaaccaaac 10623350  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 10019743 - 10019796
Alignment:
Q  296 aatccgacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    |||| ||||||| ||| |||| |||| |||||||||||||||||||||||||||    
T  10019743 aatcagacgcgtaagaactcaaatcgagggatgagtccaatacgttagtaacca 10019796  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 27900127 - 27900208
Alignment:
Q  44 aattttagcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctgca-caagcagcaagcataaag 124  Q
    ||||| |||||||||||  |||||||||||||||| ||||| ||||| | ||| ||||||  | ||||||||||||||||||    
T  27900127 aatttcagcgaatggatcaaccgacaacacggtaaaaaatctaagtgccgacagctccctaaatcaagcagcaagcataaag 27900208  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 28302166 - 28302207
Alignment:
Q  315 cagatcgtgggatgagtccaatacgttagtaaccaaacagac 356  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  28302166 cagatcgagggatgagtccaatacgttagtaaccaaatagac 28302207  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 10623622 - 10623511
Alignment:
Q  28 aagaacaatta-ggattaattttagcgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaa-gcagcaagcataaag 124  Q
    ||||||||||| || ||| |||| |||||||||| ||| | |||||| ||  |||| | ||| || ||||||||||||| |||| ||||||||||| |||    
T  10623622 aagaacaattaaggtttatttttggcgaatggatcgactgccaacacagtgtcaaaatacaattgccaacaactccctgaacaaagcagcaagcatgaag 10623523  T
Q  125 ctctttcgagca 136  Q
    ||||||||||||    
T  10623522 ctctttcgagca 10623511  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 10623479 - 10623433
Alignment:
Q  219 cttgaagcctgcagatctcaatagatctggaatcatcagagagtcaa 265  Q
    |||||| |||||||||||||| | |||||||| ||||||||||||||    
T  10623479 cttgaaacctgcagatctcaacaaatctggaaacatcagagagtcaa 10623433  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 20118169 - 20118254
Alignment:
Q  52 cgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaagcagcaagcataaa-gctctttcgagca 136  Q
    ||||| ||| ||||| ||| ||||||||||| |||||||| ||||||||||||| |  | ||||||||||||| |||||||||||||    
T  20118169 cgaatagatcgaccgccaatacggtaacaaaatccaagtgccaacaactccctg-atgaacagcaagcataaatgctctttcgagca 20118254  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 5907055 - 5907018
Alignment:
Q  309 agatctcagatcgtgggatgagtccaatacgttagtaa 346  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  5907055 agatctcatatcgagggatgagtccaatacgttagtaa 5907018  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 11203218 - 11203271
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaacaaatccaagtggcaacaactccctg 104  Q
    |||||||||||  ||| |||||||||||| |||||||||| ||||||| |||||    
T  11203218 gcgaatggattagccgtcaacacggtaaccaatccaagtgtcaacaaccccctg 11203271  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 28002894 - 28002808
Alignment:
Q  51 gcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctgcac-aagcagcaagcat-aaagctctttcgagca 136  Q
    |||||||||||||||| |||||||||| | ||||| ||||| ||  | ||||||| || ||||||||||||| ||||||||||||||||    
T  28002894 gcgaatggattgaccgccaacacggtatcaaaatctaagtgcca--agctccctgaacaaagcagcaagcataaaagctctttcgagca 28002808  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 9957348 - 9957261
Alignment:
Q  52 cgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctgcacaagcagcaagcataaa--gctctttcgagca 136  Q
    ||||||||| ||||  |||||||||||| ||||||||||| ||| | |||||||  ||| ||||||||| |||  |||||||||||||    
T  9957348 cgaatggatcgaccaccaacacggtaacaaaatccaagtgtcaatagctccctgatcaatcagcaagcacaaaatgctctttcgagca 9957261  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 27900348 - 27900384
Alignment:
Q  313 ctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  27900348 ctcagatcgagggatgagtccaatatgttagtaacca 27900384  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 31946434 - 31946347
Alignment:
Q  52 cgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaag-cagcaagcataa-agctctttcgagca 136  Q
    ||||||||||| ||| |||||||||| |||| |||||||| ||||| ||||||||||||| || ||||||||| ||||||||||||||    
T  31946434 cgaatggattgcccgccaacacggtatcaaaatccaagtgccaacagctccctgcacaagacaacaagcataacagctctttcgagca 31946347  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 3008682 - 3008731
Alignment:
Q  87 agtggcaacaactccctgcacaagcagcaagcataaagctctttcgagca 136  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  3008682 agtgccaacaactccctgaacaagcagcaagcataaagctctttcaagca 3008731  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 29032737 - 29032701
Alignment:
Q  313 ctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    ||||||||| |||||||||||||||||||||||||||    
T  29032737 ctcagatcgagggatgagtccaatacgttagtaacca 29032701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 8210060 - 8210013
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    |||||| ||| ||||||||| ||||||||||||||| |||||||||||    
T  8210060 acgcgtaagaactcagatcgagggatgagtccaataagttagtaacca 8210013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 17459206 - 17459258
Alignment:
Q  321 gtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtttatgaaac 375  Q
    |||||||||||||||||||||||||| |  ||||||||||||| |||| ||||||    
T  17459206 gtgggatgagtccaatacgttagtaatc--acagaccctttcgggtttttgaaac 17459258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 32718098 - 32718181
Alignment:
Q  55 atggattgaccgacaacacggtaaca-aatccaagtggcaacaactccctgcacaagcagcaagcataa-agctctttcgagca 136  Q
    |||||| ||||| ||||||||||||| |||| | ||| ||||| || |||| ||||||||||| ||||| ||||||||||||||    
T  32718098 atggatcgaccgccaacacggtaacataatctacgtgccaacagcttcctgaacaagcagcaaacataagagctctttcgagca 32718181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 6189910 - 6189817
Alignment:
Q  42 ttaattttagcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctgcacaagcagcaagcataaagctctttcgagca 136  Q
    |||||| |||||||||||| ||||| |||||||| | | |||| |||||  ||||||||||||| ||   ||||||||||||||||| || |||||    
T  6189910 ttaattatagcgaatggatcgaccgccaacacggaatcaaaattcaagtaccaacaactccctgaac--ccagcaagcataaagctcctttgagca 6189817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 30625572 - 30625668
Alignment:
Q  42 ttaattttagcgaatggattgaccgacaacacggtaac-aaatccaagtggcaacaactccctgcacaagcagcaagcat-aaagctctttcgagca 136  Q
    |||| ||| |||||||||| ||||| |||||||||||| |||| |||||| |||| ||||||| || |  || ||| ||| ||||||||||||||||    
T  30625572 ttaagtttggcgaatggatcgaccgccaacacggtaacaaaattcaagtgtcaactactccctacaaatacatcaaacataaaagctctttcgagca 30625668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 1029736 - 1029781
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaac 347  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  1029736 acgcgtaagaactcagatcgtgggatgagtccaatacgttagtaac 1029781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 41566432 - 41566347
Alignment:
Q  54 aatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcacaag-cagcaagcataa-agctctttcgagca 136  Q
    ||||||| ||||| |||||||||| |||| || ||||||||||| ||||||||||||| || ||||||||| ||||||||||||||    
T  41566432 aatggatcgaccgccaacacggtatcaaaatctaagtggcaacagctccctgcacaagacaacaagcataacagctctttcgagca 41566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 41566231 - 41566184
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  41566231 acgcgtaagaactcagatcgtgggatgagtctaatacgttagtaacca 41566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 1029533 - 1029620
Alignment:
Q  52 cgaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctgcac-aagcagcaagcataa-agctctttcgagca 136  Q
    ||||||||| ||||| ||||| |||| |||| | |||||| |||||||||||||||| || ||| |||||||| ||||||||||||||    
T  1029533 cgaatggatcgaccgccaacatggtatcaaaattcaagtgccaacaactccctgcacaaaacagtaagcataatagctctttcgagca 1029620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 10659105 - 10659157
Alignment:
Q  53 gaatggattgaccgacaacacggtaacaaa-tccaagtggcaacaactccctg 104  Q
    |||||||| ||||  ||||||||||||||| |||||||| |||||||||||||    
T  10659105 gaatggatcgaccaccaacacggtaacaaaatccaagtgccaacaactccctg 10659157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 11954595 - 11954643
Alignment:
Q  301 gacgcgttagatctcagatcgtgggatgagtccaatacgttagtaacca 349  Q
    ||||||| ||| ||||||||  |||||||||||||||||||| ||||||    
T  11954595 gacgcgtaagaactcagatccagggatgagtccaatacgttaataacca 11954643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 349
Target Start/End: Complemental strand, 4125 - 4094
Alignment:
Q  318 atcgtgggatgagtccaatacgttagtaacca 349  Q
    ||||||||||||||||||||||||||||||||    
T  4125 atcgtgggatgagtccaatacgttagtaacca 4094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 353236 - 353297
Alignment:
Q  302 acgcgttagatctcagatcgtgggatgagtccaatacgttagtaaccaaacagaccctttcgagtt 367  Q
    |||||| ||| ||||||||| ||||||||||||||| || ||||||    ||||||||||||||||    
T  353236 acgcgtaagaactcagatcgagggatgagtccaatatgtcagtaac----cagaccctttcgagtt 353297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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