View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15432_high_5 (Length: 401)
Name: NF15432_high_5
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15432_high_5 |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 28 - 374
Target Start/End: Complemental strand, 42125770 - 42125425
Alignment:
| Q |
28 |
cgtattcatagagtatacaattcatggtttaagcggaacttccttnnnnnnnn-tggtttaagcgtaactaattaaaacctagattactaaaatatatac |
126 |
Q |
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| T |
42125770 |
cgtattcatagagtatacaattcatggtttaagcggaacttccttaaaaaaaaatggtttaagcggaactaattaaaacctagattactaaa-tatatac |
42125672 |
T |
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| Q |
127 |
atgattataggatatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatccata |
226 |
Q |
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| T |
42125671 |
atgattatag-atatagatagaagtgatatatcttgtcttcttgcaaacttaacttcaatatgcgtgtaataagaattaagaaataaaatcatatccata |
42125573 |
T |
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| Q |
227 |
taagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgtaagtttactacaaagaatatgttagtaaaaaatgta |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125572 |
taagagaataaactgaagaagcaatcattgttttgcttctaacatgaagaaatttaaattatgtaagtttactacaaagaatatgttagtaaaaaatgta |
42125473 |
T |
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| Q |
327 |
gaaattataccacttatcttgttgacattgctgtactacttgaatatg |
374 |
Q |
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| T |
42125472 |
gaaattataccacttatcttgttgacattgctgtactacttgaatatg |
42125425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 373
Target Start/End: Original strand, 25124 - 25257
Alignment:
| Q |
249 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac |
339 |
Q |
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| T |
25124 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
25223 |
T |
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| Q |
340 |
ttatcttgttgacattgctgtactacttgaatat |
373 |
Q |
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| T |
25224 |
ttatcttattgacattgctgcacaacttgaatat |
25257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 373
Target Start/End: Complemental strand, 11396 - 11263
Alignment:
| Q |
249 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac |
339 |
Q |
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|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||| | | ||| |
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| T |
11396 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
11297 |
T |
|
| Q |
340 |
ttatcttgttgacattgctgtactacttgaatat |
373 |
Q |
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| T |
11296 |
ttatcttattgacattgctgcacaacttgaatat |
11263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 373
Target Start/End: Original strand, 14828313 - 14828446
Alignment:
| Q |
249 |
aatcattgttttgcttc-taacatgaagaaatttaaattatgtaagtttactacaaaga--------atatgttagtaaaaaatgtagaaattataccac |
339 |
Q |
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|||||||||||| |||| ||||| |||||||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||| | | ||| |
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| T |
14828313 |
aatcattgttttacttcctaacacgaagaaatttaagttacataagtttactacaaagatcaaataaatatggtggtaaaaaatgtagaaaatgcagcac |
14828412 |
T |
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| Q |
340 |
ttatcttgttgacattgctgtactacttgaatat |
373 |
Q |
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| T |
14828413 |
ttatcttattgacattgctgcacaacttgaatat |
14828446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 10172667 - 10172708
Alignment:
| Q |
198 |
aagaattaagaaataaaatcatatccatataagagaataaac |
239 |
Q |
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| T |
10172667 |
aagaattaagaaataacatcatatccatataagagaataaac |
10172708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 348701 - 348645
Alignment:
| Q |
318 |
aaaaatgtagaaattataccacttatcttgttgacattgctgtactacttgaatatg |
374 |
Q |
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| T |
348701 |
aaaaatgtagaaaatgtaccacttatcttgttgacattgctgcagaacttgaatatg |
348645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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