View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15432_high_6 (Length: 360)
Name: NF15432_high_6
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15432_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 348
Target Start/End: Complemental strand, 32248754 - 32248436
Alignment:
| Q |
29 |
caaggacatgatgaactttgcattttaagttatccatattaatgttgaaatatggtggtgaataacttcaacttccttttttggtctgtaagatcagaaa |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32248754 |
caaggatatgatgaactttgcattttaagttatccatattaatgttgaaatatggtggtgaataacttcaacttccttttttggtctgtaagatcagaaa |
32248655 |
T |
|
| Q |
129 |
agtgtttgttcttcaaaacaagtaaaaggtgcagagcattgttgttaatttatgtattcaaaactatccaaaactatgttgtatatcgtgtgtttgaaat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32248654 |
agtgtttgttcttcaaaacaagtaaaaggtgcagagcattgttgttaatttatgtattcaaaactatcaaaaactatgttgtatatcgtgtgtttgaaat |
32248555 |
T |
|
| Q |
229 |
aataaaattgtgaaacttgttgtatgatacaacttgtaacaaatttttaacaggggagggaacttctttattacttttacccttcgagtgaagaaaaata |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32248554 |
aataaaattgtgaaacttgttgtatgatacaacttgtaacaaatttttaacaggggagggaacctctttattacttttaccctacgagtgaagaaaaata |
32248455 |
T |
|
| Q |
329 |
aacctatcttaaattatatt |
348 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
32248454 |
aacctat-ttaaattgtatt |
32248436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University