View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15432_low_2 (Length: 290)
Name: NF15432_low_2
Description: NF15432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15432_low_2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 49020835 - 49020570
Alignment:
| Q |
25 |
acctcgcgggcattaaacatttctccggcgagccgtaaaagtttgaaaaacaaccatatcagccgccgggaaccgatccacggcacgactcctacatttg |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49020835 |
acctcgcgggcattaaacatttctccggcgagccgtaaaagtttgaaaaacaaccatatcagccgccggaaaccgatccacggcacgactcctacatttg |
49020736 |
T |
|
| Q |
125 |
agtccaagtggctcaactgcattgaccatcttcttcaacatctcattactataattactgcatgtcattgatatagacatagtacctggtcggaaaatct |
224 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49020735 |
agtccaagtggctcaactgcattcaccatcttcttcaacatctcattactataattactgcatgtcattgatatagacatagtacctggtcggaaaatct |
49020636 |
T |
|
| Q |
225 |
gaacaactttccttaacacatgtactatgttgtcgttaacagacccaacacattcaaagcttgcat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49020635 |
gaacaactttccttaacacatgtactatgttgtcgttaacagacccaacacattcaaagcttgcat |
49020570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 7081148 - 7081206
Alignment:
| Q |
200 |
gacatagtacctggtcggaaaatctgaacaactttccttaacacatgtactatgttgtc |
258 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||| |||| ||| || |||||||| |
|
|
| T |
7081148 |
gacattgtccctggtcggaaaatctgaacaaccttcctcaacatatgaacaatgttgtc |
7081206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University