View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15434_high_10 (Length: 384)
Name: NF15434_high_10
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 45273594 - 45273950
Alignment:
| Q |
18 |
cagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
45273594 |
cagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgc |
45273693 |
T |
|
| Q |
118 |
aacattggcaccaggtccagtgttggcatactctgcatagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaa |
217 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273694 |
aacattggcaccaggtccggtgtttgcatactctgcatagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaa |
45273793 |
T |
|
| Q |
218 |
tcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273794 |
tcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgctt |
45273893 |
T |
|
| Q |
318 |
ctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtctctg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45273894 |
ctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctg |
45273950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 45281838 - 45282194
Alignment:
| Q |
18 |
cagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
45281838 |
cagacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgc |
45281937 |
T |
|
| Q |
118 |
aacattggcaccaggtccagtgttggcatactctgcatagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaa |
217 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45281938 |
aacattggcaccaggtccggtgtttgcatactctgcatagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaa |
45282037 |
T |
|
| Q |
218 |
tcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282038 |
tcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgctt |
45282137 |
T |
|
| Q |
318 |
ctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtctctg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45282138 |
ctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtctg |
45282194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 360
Target Start/End: Original strand, 45293180 - 45293520
Alignment:
| Q |
20 |
gacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
45293180 |
gacttgggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaa |
45293279 |
T |
|
| Q |
120 |
cattggcaccaggtccagtgttggcatactctgcatagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaatc |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
45293280 |
tattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgttctccttgccaaggggtccatccatctggatgaataaaatc |
45293379 |
T |
|
| Q |
220 |
accaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttct |
319 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
45293380 |
accaatggtggattccatgacgaccgtctttgctaaaaccttccatggtctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttct |
45293479 |
T |
|
| Q |
320 |
gggatgatattgcaatcctggatcacaataccagtattcaa |
360 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
45293480 |
gggacaatattgcagccttggatcacaataccagtattcaa |
45293520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 360
Target Start/End: Original strand, 45302140 - 45302480
Alignment:
| Q |
20 |
gacttgggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
45302140 |
gacttgggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaa |
45302239 |
T |
|
| Q |
120 |
cattggcaccaggtccagtgttggcatactctgcatagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaatc |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
45302240 |
tattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgttctccttgccaaggggtccatccatctggatgaataaaatc |
45302339 |
T |
|
| Q |
220 |
accaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttct |
319 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
45302340 |
accaatggtggattccatgacgaccgtctttgctaaaaccttccatggtctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttct |
45302439 |
T |
|
| Q |
320 |
gggatgatattgcaatcctggatcacaataccagtattcaa |
360 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
45302440 |
gggacaatattgcagccttggatcacaataccagtattcaa |
45302480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 26 - 365
Target Start/End: Original strand, 45270052 - 45270409
Alignment:
| Q |
26 |
ggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccctccacttgaccctcctagcaacattgg |
125 |
Q |
| |
|
|||||||| | ||||||||||| || ||| ||||| |||||||| ||||||||||||||| | ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45270052 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
45270151 |
T |
|
| Q |
126 |
caccaggtccagtgttggcatactctgcatagtaacatgtgttgtgat------------------tttgttctccttgccaaatggtccatccatctgg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| | || |||||||| || ||||| |||||||||||||| | |
|
|
| T |
45270152 |
caccaggtccagtgttggcatactctgcaaagtaacacgtgttttcatgatgtttttctggcttgttttgttcttctggccaagtggtccatccatcttg |
45270251 |
T |
|
| Q |
208 |
atgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaac |
307 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||| | ||||| | || | ||||||||||||||||||||||| || ||||||| |||| |||| | |
|
|
| T |
45270252 |
atgaataaaatcaccaattgtggattccatgatgactgcctttgattcattttgccatggtctgcccaagtaagacctaactgtgaatttttcagggacc |
45270351 |
T |
|
| Q |
308 |
aatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattca |
365 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
45270352 |
aatgctgcttctgggatgatattgcagtcctggataacaataccagtattcatattca |
45270409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University