View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_high_13 (Length: 361)
Name: NF15434_high_13
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 51 - 347
Target Start/End: Original strand, 45282591 - 45282887
Alignment:
| Q |
51 |
tgttttctccaaaaatgatttttgatagacacgccactatttcacatatattgtttcttcattcataagtacataattaattaaataaaataaaaatgtt |
150 |
Q |
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| T |
45282591 |
tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataagtaaataattaattaaataaaataaaaaagtt |
45282690 |
T |
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| Q |
151 |
ttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatggtccttgcagg |
250 |
Q |
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| T |
45282691 |
ttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccagtgacaatggtccttgcagg |
45282790 |
T |
|
| Q |
251 |
gccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttg |
347 |
Q |
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| T |
45282791 |
gccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttg |
45282887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 51 - 347
Target Start/End: Original strand, 45274348 - 45274646
Alignment:
| Q |
51 |
tgttttctccaaaaatgatttttgatagacacgccactatttcacatatattgtttcttcattcataag-tacataattaattaaataaaataaaaat-g |
148 |
Q |
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|||||||| ||||||| | |||||| || | || ||| |||| ||||| | |||||||| ||||||| || | ||||||| |||||||||||||| | |
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| T |
45274348 |
tgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaag |
45274447 |
T |
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| Q |
149 |
ttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatggtccttgca |
248 |
Q |
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| T |
45274448 |
ctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgca |
45274547 |
T |
|
| Q |
249 |
gggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttg |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
45274548 |
gggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
45274646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 104 - 347
Target Start/End: Original strand, 45294031 - 45294275
Alignment:
| Q |
104 |
tttcttcattcataag-tacataattaattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtctt |
202 |
Q |
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|||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
45294031 |
tttcttcattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtctt |
45294130 |
T |
|
| Q |
203 |
gacaccagcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtat |
302 |
Q |
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| T |
45294131 |
gacaccagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtat |
45294230 |
T |
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| Q |
303 |
tcgtcatagacaccggccttaacgtagataacatatctgcctttg |
347 |
Q |
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|| |||||||| || ||||||||||||||| ||||||||||||| |
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| T |
45294231 |
tcatcatagacgccagccttaacgtagatagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 104 - 347
Target Start/End: Original strand, 45302991 - 45303235
Alignment:
| Q |
104 |
tttcttcattcataag-tacataattaattaaataaaataaaaatgttttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtctt |
202 |
Q |
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|||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
45302991 |
tttcttcattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtctt |
45303090 |
T |
|
| Q |
203 |
gacaccagcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtat |
302 |
Q |
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||||||||||||| | ||||||| ||||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||| | |||||||||| |
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| T |
45303091 |
gacaccagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtat |
45303190 |
T |
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| Q |
303 |
tcgtcatagacaccggccttaacgtagataacatatctgcctttg |
347 |
Q |
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| T |
45303191 |
tcatcatagacgccagccttaacgtagatagtatatctgcctttg |
45303235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 51 - 347
Target Start/End: Original strand, 45270819 - 45271113
Alignment:
| Q |
51 |
tgttttctccaaaaatgatttttgatagacacgccactatttcacatatattgtttcttcattcataag-tacataattaattaaataaaataaaaatgt |
149 |
Q |
| |
|
|||||| | ||||||||| |||||| || | || |||||||||||| || | | |||||||||||||| |||| ||||||||||||||||||||| | |
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| T |
45270819 |
tgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggtacacaattaattaaataaaataaaa--gc |
45270916 |
T |
|
| Q |
150 |
tttgatcgatgataattgaattacgtaccgaaagtggcggtttgcatggtcttgacaccagcagcaaagctctttctaccggtgacaatggtccttgcag |
249 |
Q |
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|||||||||| |||| |||||||||||| || ||||| || | | || ||| ||| || | |||||||||| |||||||||||| |||||| |
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| T |
45270917 |
tttgatcgat-ataactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttctaccagtgacaatggtctttgcag |
45271015 |
T |
|
| Q |
250 |
ggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttg |
347 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45271016 |
ggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgtctttg |
45271113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
300 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
345 |
Q |
| |
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||||||||||||||||| ||||| |||||||| |||||||| |||| |
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| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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