View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15434_high_2 (Length: 720)

Name: NF15434_high_2
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15434_high_2
NF15434_high_2
[»] chr2 (9 HSPs)
chr2 (1-703)||(2802608-2803310)
chr2 (496-558)||(30313329-30313391)
chr2 (607-681)||(33561499-33561573)
chr2 (592-681)||(2336660-2336749)
chr2 (609-681)||(30312825-30312897)
chr2 (598-701)||(13766800-13766905)
chr2 (596-650)||(25390305-25390359)
chr2 (579-681)||(29873557-29873659)
chr2 (609-650)||(36005930-36005971)
[»] chr6 (3 HSPs)
chr6 (604-681)||(8481962-8482039)
chr6 (592-681)||(5034854-5034943)
chr6 (640-681)||(27226675-27226716)
[»] chr5 (1 HSPs)
chr5 (595-701)||(10351207-10351315)
[»] chr7 (2 HSPs)
chr7 (594-646)||(7192786-7192838)
chr7 (609-650)||(21619095-21619136)
[»] chr3 (3 HSPs)
chr3 (592-676)||(41857465-41857549)
chr3 (496-555)||(39336175-39336234)
chr3 (640-681)||(260805-260846)
[»] chr1 (6 HSPs)
chr1 (501-556)||(9956063-9956118)
chr1 (568-681)||(30576592-30576705)
chr1 (609-681)||(1188638-1188710)
chr1 (604-650)||(32594761-32594807)
chr1 (608-681)||(1187413-1187486)
chr1 (412-477)||(37170083-37170148)
[»] chr8 (4 HSPs)
chr8 (568-681)||(40991789-40991902)
chr8 (496-556)||(9620622-9620682)
chr8 (592-655)||(30737651-30737714)
chr8 (604-681)||(4154326-4154402)
[»] chr4 (5 HSPs)
chr4 (628-703)||(42480536-42480611)
chr4 (604-650)||(22028412-22028458)
chr4 (592-673)||(23630348-23630429)
chr4 (609-681)||(34544142-34544215)
chr4 (568-681)||(41603198-41603311)
[»] scaffold0113 (1 HSPs)
scaffold0113 (496-549)||(39615-39668)


Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Original strand, 2802608 - 2803310
Alignment:
Q  1 cttgtgtgttctactgtgtattgtaattgttatatttagtttgatggtccaagaatagtgtgagaaaggcatggagacaaaaagtctcaagatggtaact 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2802608 cttgtgtgttctactttgtattgtaattgttatatttagtttgatggttcaagaatagtgtgagaaagacatggagacaaaaagtctcaagatggtaact 2802707  T
Q  101 gtaatgatgaaaaaagaaagagaagcctcgctttctgtgctgataaagtgatttgaattgtgctggaagaaataactattcacagtacatattttggatt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802708 gtaatgatgaaaaaagaaagataagcctcgctttctgtgctgataaagtgatttgaattgtgctggaagaaataactattcacagtacatattttggatt 2802807  T
Q  201 cttttcctcagctattggcatattgcagagtaaaggaaagcacaagagatttgagaaaaggagagtctaaagatttcaacaagatttggactaaatttag 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802808 cttttcctcagctattggcatattgaagagtaaaggaaagcacaagagatttgagaaaaggagagtctaaagatttcaacaagatttggactaaatttag 2802907  T
Q  301 aaagtatacatgttatataaatgatatagtatagagtgtgacaaataataaatcgtaattaacttaaatcttttcgacacatttctacctgttggatcat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2802908 aaagtatacatgttatataaatgatatagtatagagtgtgacaaataataaatcgtaattaacttaaatcttttcgacacatttctacctgttggatcac 2803007  T
Q  401 gagggaagtcgatcatccacattggtcccagaacaaccatataagtgagttgaacaccaaaatttaatccaaaacctttggtcaggatcacccttgaact 500  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2803008 gagggaagtcaatcatccacattggtcccagaacaaccatataagtgagttgaacaccaaactttaatccaaaacctttggtcaggatcacccttgaact 2803107  T
Q  501 cttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccaggggatcaccattcacccacatttggcccagagccacaagacaagtgag 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803108 cttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccgggggatcaccattcacccacatttggcccagagccacaagacaagtgag 2803207  T
Q  601 ttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagact 700  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2803208 ttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtgagact 2803307  T
Q  701 ttt 703  Q
    |||    
T  2803308 ttt 2803310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 496 - 558
Target Start/End: Complemental strand, 30313391 - 30313329
Alignment:
Q  496 gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccaggggatc 558  Q
    ||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  30313391 gaactattcgtcaaaccacgactctgataccactgttgggtcacgaggagagcccgggggatc 30313329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 681
Target Start/End: Original strand, 33561499 - 33561573
Alignment:
Q  607 atcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||| ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561499 atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 592 - 681
Target Start/End: Complemental strand, 2336749 - 2336660
Alignment:
Q  592 acaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||||||||||| ||||  || ||||||||  ||||| |||||| |||||||||| ||||  ||||| | ||||||||||||||||    
T  2336749 acaagtgagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccactt 2336660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 681
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  609 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||||||||||||| |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 701
Target Start/End: Complemental strand, 13766905 - 13766800
Alignment:
Q  598 gagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatct--cttttatagaatgttcaacctccacttctttaaataatgtg 695  Q
    ||||| |||| |||| ||| || |||||| ||||| ||||||||||||  |||||||  |||||||| |||  ||||||||||||| | |||| |||||     
T  13766905 gagttagacaccacattttaacacaaaaccttaagtcattgagtttattagtcatctcacttttataaaataatcaacctccacttttctaaacaatgtt 13766806  T
Q  696 agactt 701  Q
    ||||||    
T  13766805 agactt 13766800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 650
Target Start/End: Original strand, 25390305 - 25390359
Alignment:
Q  596 gtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtc 650  Q
    |||||||||||| ||||||| |||||||||| |||||||| |  |||||||||||    
T  25390305 gtgagttggacaccacacttctacccaaaaccttaagacaataggtttatgggtc 25390359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 681
Target Start/End: Original strand, 29873557 - 29873659
Alignment:
Q  579 ccagagccacaagacaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctcca 678  Q
    ||||||| || | |||||||||   ||| ||||||| |||| |||||| ||||| || |||||||||| ||| || |  ||||| |||||||||||||||    
T  29873557 ccagagcaaccacacaagtgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctcca 29873656  T
Q  679 ctt 681  Q
    |||    
T  29873657 ctt 29873659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 650
Target Start/End: Original strand, 36005930 - 36005971
Alignment:
Q  609 cacacttttacccaaaacgttaagacattgagtttatgggtc 650  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  36005930 cacacttttacccaaaaccttaaggcaatgagtttatgggtc 36005971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 604 - 681
Target Start/End: Complemental strand, 8482039 - 8481962
Alignment:
Q  604 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||| |||||| ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482039 gacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 681
Target Start/End: Original strand, 5034854 - 5034943
Alignment:
Q  592 acaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||| ||| ||| || | ||||| ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034854 acaagtgaattgtacaccatatttttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 681
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  640 gtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 595 - 701
Target Start/End: Original strand, 10351207 - 10351315
Alignment:
Q  595 agtgagttggacatcacacttttacccaaaacg--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataat 692  Q
    |||||| | ||||||||||||||||||||||    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||    
T  10351207 agtgagatagacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaat 10351306  T
Q  693 gtgagactt 701  Q
    |||||||||    
T  10351307 gtgagactt 10351315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 646
Target Start/End: Complemental strand, 7192838 - 7192786
Alignment:
Q  594 aagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatg 646  Q
    |||||||||||||||||||  ||||| |||||| |||||||||||||||||||    
T  7192838 aagtgagttggacatcacatctttactcaaaaccttaagacattgagtttatg 7192786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 650
Target Start/End: Original strand, 21619095 - 21619136
Alignment:
Q  609 cacacttttacccaaaacgttaagacattgagtttatgggtc 650  Q
    |||||||||||||||||| |||||||| || |||||||||||    
T  21619095 cacacttttacccaaaaccttaagacaatgggtttatgggtc 21619136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 676
Target Start/End: Complemental strand, 41857549 - 41857465
Alignment:
Q  592 acaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctc 676  Q
    |||||||||||| ||||||||  || ||||||||| ||||| ||||||||||||||||  | || |||||| |||||| ||||||    
T  41857549 acaagtgagttgaacatcacatcttaacccaaaactttaagtcattgagtttatgggtgttatcatttataaaatgttaaacctc 41857465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 555
Target Start/End: Original strand, 39336175 - 39336234
Alignment:
Q  496 gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccagggg 555  Q
    |||| |||||| |||||||||||||||||||| ||||||  ||||||| ||||| |||||    
T  39336175 gaacccttcgttgaaccacgactctgataccaatgttggatcacgaggggagccaagggg 39336234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 681
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  640 gtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 501 - 556
Target Start/End: Complemental strand, 9956118 - 9956063
Alignment:
Q  501 cttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccagggga 556  Q
    ||||||||||||  | ||||||||||||||||||| ||||||||||||| ||||||    
T  9956118 cttcgtcgaaccgaggctctgataccactgttgggtcacgaggagagcctagggga 9956063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 681
Target Start/End: Original strand, 30576592 - 30576705
Alignment:
Q  568 ccacatttggcccagagccacaagacaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatg 667  Q
    ||||||| ||| |||||| |||| |||||||||   ||||| ||| ||||||||||||| ||||||||||  || |||||||| ||||  | ||| | ||    
T  30576592 ccacattgggctcagagcaacaacacaagtgagagagacattacatttttacccaaaacattaagacattatgtctatgggtcctctcactcataaagtg 30576691  T
Q  668 ttcaacctccactt 681  Q
    ||||||||| ||||    
T  30576692 ttcaacctctactt 30576705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 681
Target Start/End: Original strand, 1188638 - 1188710
Alignment:
Q  609 cacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||||||||||||| ||||  || |||||||||| ||| ||||  ||||| ||| ||||||||||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccactt 1188710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 650
Target Start/End: Original strand, 32594761 - 32594807
Alignment:
Q  604 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 650  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  32594761 gacaccacactcttacccaaaaccttaagacaatgagtttatgggtc 32594807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 681
Target Start/End: Original strand, 1187413 - 1187486
Alignment:
Q  608 tcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||||||||| |||||  |||||  | |||||||||||||| ||||  ||||| |||||| |||||||||||    
T  1187413 tcacacttttactcaaaatcttaaggtaatgagtttatgggtcttctcacttataaaatgtttaacctccactt 1187486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 37170148 - 37170083
Alignment:
Q  412 atcatccacattggtcccagaacaaccatataagtgagttgaacaccaaaatttaatccaaaacct 477  Q
    |||||||||||||  || |||  ||||| ||||||||||| ||||||| | |||||||||||||||    
T  37170148 atcatccacattgagccaagagaaaccacataagtgagttaaacaccatattttaatccaaaacct 37170083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 681
Target Start/End: Complemental strand, 40991902 - 40991789
Alignment:
Q  568 ccacatttggcccagagccacaagacaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatg 667  Q
    ||||||| |||| ||||| || | ||| |||||||||||| ||||  || ||||||||| || || ||||| ||||||||||| ||||  ||||  | ||    
T  40991902 ccacattgggcctagagcaaccacacaggtgagttggacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcacttatgaagtg 40991803  T
Q  668 ttcaacctccactt 681  Q
    ||||||||||||||    
T  40991802 ttcaacctccactt 40991789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 556
Target Start/End: Original strand, 9620622 - 9620682
Alignment:
Q  496 gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcccagggga 556  Q
    |||| |||||||||||||| ||||||||||||  |||||| ||||||| |||||| |||||    
T  9620622 gaacccttcgtcgaaccacaactctgataccatcgttgggtcacgaggggagcccggggga 9620682  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 655
Target Start/End: Original strand, 30737651 - 30737714
Alignment:
Q  592 acaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctc 655  Q
    |||| ||||||||||| | |||||| ||||||||| ||| ||||||| ||||||||||| ||||    
T  30737651 acaattgagttggacaccgcactttaacccaaaaccttatgacattgggtttatgggtcctctc 30737714  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 681
Target Start/End: Original strand, 4154326 - 4154402
Alignment:
Q  604 gacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    ||||||||||  ||||||||||  ||||| || |||||||||||||| ||||  ||||| | ||||||||||||||||    
T  4154326 gacatcacacacttacccaaaatattaaggcaatgagtttatgggtc-tctcacttataaagtgttcaacctccactt 4154402  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 703
Target Start/End: Complemental strand, 42480611 - 42480536
Alignment:
Q  628 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagactttt 703  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | ||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagactttt 42480536  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 650
Target Start/End: Original strand, 22028412 - 22028458
Alignment:
Q  604 gacatcacacttttacccaaaacgttaagacattgagtttatgggtc 650  Q
    |||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  22028412 gacaccacactcttacccaaaacattaagacaatgagtttatgggtc 22028458  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 673
Target Start/End: Complemental strand, 23630429 - 23630348
Alignment:
Q  592 acaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaac 673  Q
    |||||||||  ||| ||||||||||||||||||   ||||||| ||||||||||| ||| ||||  ||||| | ||||||||    
T  23630429 acaagtgagagggaaatcacacttttacccaaagtcttaagacgttgagtttatgagtcgtctcacttataaagtgttcaac 23630348  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 681
Target Start/End: Complemental strand, 34544215 - 34544142
Alignment:
Q  609 cacacttttacccaaaa-cgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 681  Q
    |||||| |||||||||| | ||||| || |||||||||||||| |||| |||||| | || |||||||||||||    
T  34544215 cacactcttacccaaaaaccttaaggcaatgagtttatgggtcctctcatttataaagtgatcaacctccactt 34544142  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 681
Target Start/End: Original strand, 41603198 - 41603311
Alignment:
Q  568 ccacatttggcccagagccacaagacaagtgagttggacatcacacttttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatg 667  Q
    ||||||| |||||| ||| || | |||||||| ||| ||| || |  |||||||||||| |||||||| |  ||||||||||| ||||  ||||| | ||    
T  41603198 ccacattgggcccaaagcaaccatacaagtgaattgtacaccaaatctttacccaaaaccttaagacactatgtttatgggtcttctcacttataaagtg 41603297  T
Q  668 ttcaacctccactt 681  Q
     |||||||||||||    
T  41603298 ctcaacctccactt 41603311  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 39668 - 39615
Alignment:
Q  496 gaactcttcgtcgaaccacgactctgataccactgttgggccacgaggagagcc 549  Q
    |||| |||||||||||| || ||||||||||||||||||| ||| ||| |||||    
T  39668 gaacccttcgtcgaacctcggctctgataccactgttgggtcactaggggagcc 39615  T

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