View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15434_high_25 (Length: 249)
Name: NF15434_high_25
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 6108476 - 6108284
Alignment:
| Q |
48 |
ttaccaaagaaacaaatgtttcaaaaacaaaagaaacatgggattgaatctgagacacttacaatggatgttacaagggtggcttggcctctggtgcaaa |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6108476 |
ttaccaaagaaacaaatgtttcaaaaacaaaagaaacatgggattgaatctgagacacttacaatggatgttacaagggtggcttggcctctggtgcaaa |
6108377 |
T |
|
| Q |
148 |
cagatcgagtcttcctacctaaaccaggacaatggccacaatagtagcctgtaccacaatctgtagcagctgaacatgcttctacaacctttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6108376 |
cagatcgagtcttcctacctaaaccaggacaatggccacaatagtagcctgtaccacaatctgtagcagctgaacatgcttctacaacctttg |
6108284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6108510 - 6108477
Alignment:
| Q |
1 |
gctaggactcaaacacgaaacacggggttttcct |
34 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
6108510 |
gctaggactcaaacacgaaacacgaggttttcct |
6108477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University