View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_high_26 (Length: 240)
Name: NF15434_high_26
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 5890153 - 5890014
Alignment:
| Q |
2 |
ataggtatttatagtaatcaactaaactaattgaagtagttactctctaattataagctaattacatgattaagctatataacttgtatctcaagtaaca |
101 |
Q |
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| T |
5890153 |
ataggtatttatagagatcagctaaactaactaaagtagttactctctaattataagctaattacatgattaaattagataacttgtatctcaagtaata |
5890054 |
T |
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| Q |
102 |
gctggaatggttttgctttgttgttcttcttgctctaata |
141 |
Q |
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| T |
5890053 |
gattgaatggctttgctttgttgttcttcttgctctaata |
5890014 |
T |
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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 46677481 - 46677345
Alignment:
| Q |
5 |
ggtatttatagtaatcaactaaactaattgaagtagttactctctaattataagctaattacatgattaagctatataacttgtatctcaagtaacagct |
104 |
Q |
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| T |
46677481 |
ggtatttatagagatgaactaaactaaccagagtagttactctctaattataagctaattacaagattaaactatataactagtatctcaagtaacagct |
46677382 |
T |
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| Q |
105 |
ggaatggttttgctttgttgttcttcttgctctaata |
141 |
Q |
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| T |
46677381 |
ggaatatcttggctttgttgttcttcttgctctaata |
46677345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 16984510 - 16984403
Alignment:
| Q |
36 |
agtagttactctctaattataagctaattacatgattaagctatataacttgtatctcaagtaacagctggaatggttttgctttgttgttcttcttgct |
135 |
Q |
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| T |
16984510 |
agtaattactctctaattatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatctttgctttgttgttcttcttgct |
16984411 |
T |
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| Q |
136 |
ctaatagt |
143 |
Q |
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|||||||| |
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| T |
16984410 |
ctaatagt |
16984403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 16989209 - 16989104
Alignment:
| Q |
36 |
agtagttactctctaattataagctaattacatgattaagctatataacttgtatctcaagtaacagctggaatggttttgctttgttgttcttcttgct |
135 |
Q |
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|||| |||||||||||||||| |||||||||| |||||| |||||||||| | ||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
16989209 |
agtaattactctctaattatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaatatcttggctttgttgttcttcttgct |
16989110 |
T |
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| Q |
136 |
ctaata |
141 |
Q |
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|||||| |
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| T |
16989109 |
ctaata |
16989104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 21806752 - 21806850
Alignment:
| Q |
43 |
actctctaattataagctaattacatgattaagctatataacttgtatctcaagtaacagctggaatggttttgctttgttgttcttcttgctctaata |
141 |
Q |
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|||||||||||||| |||||||||| |||||| |||||||||| | |||||||||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
21806752 |
actctctaattatatgctaattacaagattaaactatataactagaatctcaagtaacagttggaatatcttggctttgttgttcttcttgctctaata |
21806850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 21811432 - 21811497
Alignment:
| Q |
43 |
actctctaattataagctaattacatgattaagctatataacttgtatctcaagtaacagctggaa |
108 |
Q |
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| T |
21811432 |
actctctaattatatgctaattacaagattaaactatataactagaatctcaagtaacagctggaa |
21811497 |
T |
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