View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_high_28 (Length: 232)
Name: NF15434_high_28
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_high_28 |
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| [»] scaffold0717 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold1158 (1 HSPs) |
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Alignment Details
Target: scaffold0717 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 2978 - 3173
Alignment:
| Q |
19 |
gattcacacgatctctttcttagggaaagaagtttgctttaacaagagtaggtaacttgttatttttgccaacatcaacaatcagtctaagaaaatgaac |
118 |
Q |
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| T |
2978 |
gattcacacgatctctttcatagggaaagaagtttgctttaacaagagtaggtaacttgttgtttttgccaacatcaacaatcagtctaagaaaatgaac |
3077 |
T |
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| Q |
119 |
aaaggagaacctctggttcatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatct |
214 |
Q |
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| T |
3078 |
aaaggagaacctctggttcatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatct |
3173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 2335 - 2137
Alignment:
| Q |
19 |
gattcacacgatctctttcttagggaaagaagtttgctttaacaagagtaggtaacttgttatttttgccaacatcaacaatcagtctaagaaaatgaac |
118 |
Q |
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| T |
2335 |
gattcacacgatctctttcttttggaaagaagtttgctttaacaagagtaggtaacttgttatttttgccaacatcaacaatcagtctaagaaaatgaac |
2236 |
T |
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| Q |
119 |
aaaggagaacctctggttcatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatctgtg |
217 |
Q |
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| T |
2235 |
aaaggagaacctctggtttatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatgtctgtg |
2137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 1 - 173
Alignment:
| Q |
42 |
ggaaagaagtttgctttaacaagagtaggtaacttgttatttttgccaacatcaacaatcagtctaagaaaatgaacaaaggagaacctctggttcatgc |
141 |
Q |
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| T |
1 |
ggaaagaagtttgctttaacaagagtaggtaacttgttatttttgccaacatcaacaatcagtctaagaaaatgaacaaaggagaacctctggttaatgc |
100 |
T |
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| Q |
142 |
attgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatct |
214 |
Q |
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| T |
101 |
attgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatct |
173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1158 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold1158
Description:
Target: scaffold1158; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 891 - 696
Alignment:
| Q |
19 |
gattcacacgatctctttcttagggaaagaagtttgctttaacaagagtaggtaacttgttatttttgccaacatcaacaatcagtctaagaaaatgaac |
118 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
891 |
gattcacacgatctctttcataggaaaagaagtttgctttaacaagagtaggtaacttgttgtttttgccaacatcaacaatcagtctaagaaaatgaac |
792 |
T |
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| Q |
119 |
aaaggagaacctctggttcatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatct |
214 |
Q |
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| T |
791 |
aaaggagaacctatggttcatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcactcaaatttcttttccaatatct |
696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 20535375 - 20535574
Alignment:
| Q |
19 |
gattcacacgatctctttcttagggaaagaagtttgctttaacaagagtaggtaacttgttatttttgccaacatcaacaatcagtctaagaaaatgaac |
118 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
20535375 |
gattcacacgatctctttcatccggaaagaagtttgctttaacaagagtaggtaacttgttgtttttgccaacatcaacaatcagtctaagcaaatgaac |
20535474 |
T |
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| Q |
119 |
aaaggagaacctc----tggttcatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatct |
214 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20535475 |
aaaggagaacctctctttggttcatgcattgctcatcttagactcgattgtagatgttggaaataacaacaagctcgctgaaagttcttttccaatatct |
20535574 |
T |
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