View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15434_high_7 (Length: 562)

Name: NF15434_high_7
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15434_high_7
NF15434_high_7
[»] chr7 (4 HSPs)
chr7 (144-268)||(6323034-6323159)
chr7 (461-556)||(6323184-6323279)
chr7 (148-326)||(6324120-6324295)
chr7 (278-364)||(28126367-28126453)
[»] chr4 (2 HSPs)
chr4 (278-364)||(52518952-52519038)
chr4 (203-305)||(3274451-3274554)
[»] scaffold0286 (1 HSPs)
scaffold0286 (210-327)||(15198-15316)
[»] chr6 (2 HSPs)
chr6 (210-327)||(2161790-2161908)
chr6 (278-364)||(5377070-5377156)
[»] chr2 (2 HSPs)
chr2 (206-267)||(20515991-20516053)
chr2 (324-372)||(31155477-31155525)
[»] chr1 (1 HSPs)
chr1 (278-364)||(17449502-17449588)
[»] chr3 (1 HSPs)
chr3 (299-360)||(6789833-6789894)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 144 - 268
Target Start/End: Original strand, 6323034 - 6323159
Alignment:
Q  144 accattctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatg 243  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6323034 accattctagttagtatcatagagaactataaataaatcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatg 6323133  T
Q  244 agtattctt-ccatgaatacacataa 268  Q
    ||||||||| ||||||||||||||||    
T  6323134 agtattcttcccatgaatacacataa 6323159  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 461 - 556
Target Start/End: Original strand, 6323184 - 6323279
Alignment:
Q  461 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctctgtgctcct 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  6323184 ttcacaaaattcaattctttttgtggagtgaattcagttcgatcatcactgttttcctcgcttgtgtttgtggcggcgatttgtctcagtgttcct 6323279  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 148 - 326
Target Start/End: Original strand, 6324120 - 6324295
Alignment:
Q  148 ttctagttagtatcatagagaactataaataagtcacttcattgcatctcatcttatcttttttcaatctatattcattcaatatgaatttctatgagta 247  Q
    ||||||||||||| |||||| |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||    
T  6324120 ttctagttagtattatagaggactataaatatgtcacttcattgtatcccattttatcttttttcaatctatattcattcaatatgaattttaatgagta 6324219  T
Q  248 ttcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttgactccgtgattctcaaca 326  Q
    |||||| ||| |||||||||| || ||| | |||||    || ||| |||||||||||||||||||| | ||||||||||    
T  6324220 ttcttctcataaatacacatatgctctctatcttgc----atatatgatctttctccctttgactccattattctcaaca 6324295  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 28126453 - 28126367
Alignment:
Q  278 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 364  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  28126453 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 28126367  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 52518952 - 52519038
Alignment:
Q  278 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 364  Q
    |||||||| |||||| |||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  52518952 cttgcttacatctatgatctttctccctatgattccatgattttcaacatggtatcagagcgataccctagggaggaagatgaagat 52519038  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 3274554 - 3274451
Alignment:
Q  203 atcttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttct 301  Q
    ||||||| |||||||||||| ||||||||| ||| | || ||||||||||| |||||||||||||| || ||| |  ||||||| || ||| || |||||    
T  3274554 atcttttatcaatctatatttattcaatataaatctatacgagtattcttcacatgaatacacatatgctctctattttgcttacatatatgatgtttct 3274455  T
Q  302 ccct 305  Q
    ||||    
T  3274454 ccct 3274451  T

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Target: scaffold0286 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 327
Target Start/End: Original strand, 15198 - 15316
Alignment:
Q  210 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 308  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  15198 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 15297  T
Q  309 actccgtgattctcaacat 327  Q
    | ||| ||||| |||||||    
T  15298 attccatgattttcaacat 15316  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 327
Target Start/End: Complemental strand, 2161908 - 2161790
Alignment:
Q  210 ttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacataagccctccagcttgcttaaatctataatctttctccctttg 308  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| || ||| | |||||||| | |||| |||||  ||||| ||    
T  2161908 ttcaatctatactcattcaatatgaatttctacgagtattcttctcataaatacacatatgctctctatcttgcttacaactatgatcttcatccctatg 2161809  T
Q  309 actccgtgattctcaacat 327  Q
    | ||| ||||| |||||||    
T  2161808 attccatgattttcaacat 2161790  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 5377070 - 5377156
Alignment:
Q  278 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 364  Q
    |||||||| |||||| |  ||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  5377070 cttgcttacatctatgacttttctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatgaagat 5377156  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 20516053 - 20515991
Alignment:
Q  206 ttttttcaatctatattcattcaatatgaatttctatgagtattcttc-catgaatacacata 267  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  20516053 tttttgcaatctatattcattcaatatgaatttctatgagtattcttctcatgattacacata 20515991  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 31155525 - 31155477
Alignment:
Q  324 acatggtatcagagtgatactcgagggaggaagatgaagattgtgcttc 372  Q
    |||||||||||||| ||||| ||||||| | ||||||||| ||||||||    
T  31155525 acatggtatcagagcgatacccgagggatgtagatgaagactgtgcttc 31155477  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 17449502 - 17449588
Alignment:
Q  278 cttgcttaaatctataatctttctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatgaagat 364  Q
    |||||||| |||||| | |||||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||| ||||||||||||||    
T  17449502 cttgcttacatctatgacctttctccctatgattccatgattcttaacatggtatcagagcgataccctaggaaggaagatgaagat 17449588  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 6789833 - 6789894
Alignment:
Q  299 tctccctttgactccgtgattctcaacatggtatcagagtgatactcgagggaggaagatga 360  Q
    ||||||| ||| ||| ||||||| ||||||||||||||| ||||| | ||||||||||||||    
T  6789833 tctccctatgattccatgattcttaacatggtatcagagcgataccctagggaggaagatga 6789894  T

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