View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_high_8 (Length: 559)
Name: NF15434_high_8
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 187 - 542
Target Start/End: Complemental strand, 39824994 - 39824639
Alignment:
| Q |
187 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttctctagtttctcaatctctctatgacgcaattcacacattcacta |
286 |
Q |
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| T |
39824994 |
ctctcattaatcaaatctcttttcaagtttccaccatctaggttgttaatttcttctgtagtttctcaatctctctatgacgcaattcacacattcacta |
39824895 |
T |
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| Q |
287 |
ccttatttgcaccaaacaacaacaactttttcaaacccttcttcttccatgaacaaaaacaatcaagtaccgccagataagcctactaaaccatggttcc |
386 |
Q |
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| T |
39824894 |
ccttatttgcaccaaacaacaacaactttttcaaacccttcttcttccatgaacaaaaacaatcaagtaccgccagataagcctactaaaccatggttcc |
39824795 |
T |
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| Q |
387 |
caacatccaaagctttaactacctttggtgacacaaactgcatggaacagttacttgttcattgcgcaaacgcaatcgaaacaaacgatgtaacacttgc |
486 |
Q |
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| T |
39824794 |
caacatccaaagctttaactacctttggagacacaaactgcatggaacagttacttgttcattgcgcaaacgcaatcgaaacaaacgatgtaacacttgc |
39824695 |
T |
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| Q |
487 |
tcaacaaatcctttgggttctcaataacatagcaccacaagacggtgattcaaatc |
542 |
Q |
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| T |
39824694 |
tcagcaaatcctttgggttctcaataacatagcaccacaagacggtgattcaaatc |
39824639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 39825174 - 39825021
Alignment:
| Q |
5 |
tacctcaatataaaggactttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgtaatataaaggttcactccgt |
104 |
Q |
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| T |
39825174 |
taccgcaatataaaggattttgacgtctctgcaaagtaatctcacccgcaattttcactgcatcggtctcatttcgttgtaatataaaggttcactccgt |
39825075 |
T |
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| Q |
105 |
cgacctcaaggttatagcataactgcaaccacaatttaaaaccagggtatcaac |
158 |
Q |
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| T |
39825074 |
cggcctcaaggtcatagcatatctacaaccgcaatttaaaaccagggtatcaac |
39825021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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