View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_high_9 (Length: 511)
Name: NF15434_high_9
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 48565207 - 48565444
Alignment:
| Q |
12 |
agtagcataggaaagcaaatgcataccgattcacttggtagtttaataaaattattttttgttagttcatattgatttacattatcttgcggtgcaaact |
111 |
Q |
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| T |
48565207 |
agtatcataggaaagcaaatgcataccgattcacttggtagtttaataaaattattttttgttagttcatattgatttacattatcttgcggtgcaaact |
48565306 |
T |
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| Q |
112 |
tataaaaactaaacatttgatgacttctgcatgctaactaacataagtctttttcatttaatctgagttatttaaataccgctagtgaatttccgagatt |
211 |
Q |
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| T |
48565307 |
tataaaaactaaacatttgatgacttctacatgctaactaacataagtc-ttttcatttaatctgag----ttaaataccgctagtgaatttccgagatt |
48565401 |
T |
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| Q |
212 |
tctacagtctagtctaaccatgatgaccaaaggcttattctat |
254 |
Q |
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| T |
48565402 |
tctacagtctagtctaaccatgatgaccaaaggcttattctat |
48565444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 48567921 - 48568013
Alignment:
| Q |
400 |
caaggtataagtacttaagagcaggtctatagttaacattttaggtcattcaaaattgattaatttgaaagagatatccaagcatatttgaaa |
492 |
Q |
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| T |
48567921 |
caaggtataagtacttaagagcaggtctatagttaacattttaggtcattcaaaattgattaatttgaaagagatatccgagcatatttgaaa |
48568013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 48565488 - 48565548
Alignment:
| Q |
266 |
tgagggatgggaaattgaatcatcatatttgaagtgtgtgcaatctccctcttttttctct |
326 |
Q |
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| T |
48565488 |
tgaggtatgggaaattgaatcatcatatttgaagtgtgtgcaatctccctcttttttctct |
48565548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 404
Target Start/End: Original strand, 48565571 - 48565601
Alignment:
| Q |
374 |
tatgtcactggttcgtcctctcttcacaagg |
404 |
Q |
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| T |
48565571 |
tatgtcactggttcgtcctctcttcacaagg |
48565601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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