View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_16 (Length: 357)
Name: NF15434_low_16
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 40441180 - 40441031
Alignment:
| Q |
10 |
aagaatattgcttgacaataaaggatcttgtaagaagcataaatcaggttttgaggcagcttatttgatccaaaacaaccagtttcaaggcatcaacatt |
109 |
Q |
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| T |
40441180 |
aagaatattgcttgacaataaaggatcttgtaagaagcataaatcaggttttgaggcagcttatttgatccaaaacaaccagtttcaaggcatcaacatt |
40441081 |
T |
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| Q |
110 |
tgttgatgtgcatgctaatgagtcatgactatagtctatagtaatgacct |
159 |
Q |
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| T |
40441080 |
tgttgatgtgcatgctaatgagtcatgactatagtctatagtaatgacct |
40441031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 40425872 - 40425716
Alignment:
| Q |
10 |
aagaatattgcttgacaataaaggatcttgtaagaagcataaatcaggttttgaggcagcttatttgatc-caaaacaaccagtttcaaggcatcaacat |
108 |
Q |
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| T |
40425872 |
aagaatattgcttgacaatgaaggatctcataaggagcataagtcaggttttgaggcagctcatttgatcttaaagcaacca-tttcaaggcatcaaaat |
40425774 |
T |
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| Q |
109 |
ttgttg----atgtgcatgctaatgagtcatgactatagtctatagtaatgaccttag |
162 |
Q |
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| T |
40425773 |
ttgttgatgcatgtgcatgctaatgagtcatgactatagtctatgggaatgaccttag |
40425716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 40440969 - 40440903
Alignment:
| Q |
216 |
gtccatcatttggattattgaggtatatatttgagtgcagagttcaacatatgataatgccaaggtg |
282 |
Q |
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| T |
40440969 |
gtccatcatttggattattgaggtatatatttgagtgcagagttcaacatatgataatgccaaggtg |
40440903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 40425657 - 40425592
Alignment:
| Q |
217 |
tccatcatttggattattgaggtatatatttgagtgcagagttcaacatatgataatgccaaggtg |
282 |
Q |
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| T |
40425657 |
tccatcatttggattactgaagtatatatctgagtgcagagttcaacatatgataatgcctaggtg |
40425592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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