View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15434_low_17 (Length: 355)
Name: NF15434_low_17
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 46215650 - 46215318
Alignment:
| Q |
18 |
acatgatatttggaaacagcaggaccaacatttgtaacagttcggtgaatcgtcgaagcaaaattggttggttttgctggaatcacaactgatatagcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46215650 |
acatgatatttggaaacagcaggaccaacattggtaacagttcggtgaatcgttgaagcaaaattggttggttttgctggaatcacaactgatatagcag |
46215551 |
T |
|
| Q |
118 |
gatagttcaagtcactagcactagcaagagtgtgtttgcaatttctgtttgaatttttagaaaaaactactaattctgaagggcttagtttctttgtgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46215550 |
gatagttcaagtcactagcactagcaagagtgtgtttgcaatttctgtttgaatttttagaaaaaactactaattctgaagggcttagtttctttgtgca |
46215451 |
T |
|
| Q |
218 |
aagaaactcaaagtaatcttgaggttcgatatcatataataaacctggatcaagagcttttctaggattaatatggccagcaccatgatcataaggagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46215450 |
aagaaactcaaagtaatcttgaggttcgatatcatataataaacctggatcaagagcttttctaggattaatatggccagcaccatgatcataaggagtt |
46215351 |
T |
|
| Q |
318 |
gaaaattcagcagaagaagcatctctaagaggt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46215350 |
gaaaattcagcagaagaagcatctctaagaggt |
46215318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 335
Target Start/End: Original strand, 366516 - 366674
Alignment:
| Q |
181 |
aaactactaattctgaagggcttagtttctttgtgcaaagaaactcaaagtaatcttgaggttcgatatcatataataaacctggatcaagagcttttct |
280 |
Q |
| |
|
||||| ||| ||||||||| |||| |||||||||||||| |||||| | ||||||||| |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
366516 |
aaactcctatttctgaaggacttactttctttgtgcaaataaactcgatgtaatcttgtggtttaatatcatatactaaacctggatcaagagcttttct |
366615 |
T |
|
| Q |
281 |
aggattaatat----ggccagcaccatgatcataaggagttgaaaattcagcagaagaa |
335 |
Q |
| |
|
||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
366616 |
aggtttaataaataggtccagcaccatgatcataaggagttgaaaattcagcagaagaa |
366674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University