View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_18 (Length: 344)
Name: NF15434_low_18
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 40572472 - 40572330
Alignment:
| Q |
1 |
gcatattacactgcaaattgtatacgtagattgagtacatgcccttccaatcaaattgaataattataaattaacagttagaacattttagttggcaatt |
100 |
Q |
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| T |
40572472 |
gcatattacactgcaaattgtatacgtagattgagtacatgcccttccaatcaaattgaataattataaattaacagttagaacattttagttggcaatt |
40572373 |
T |
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| Q |
101 |
aaaatcacaaactaacaataagaattattctaatttcaatttg |
143 |
Q |
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| T |
40572372 |
aaaatcacaaactaacaatgagaattattctaatttgaatttg |
40572330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 326
Target Start/End: Complemental strand, 40568546 - 40568451
Alignment:
| Q |
221 |
ggttcgggtgtatatgtcatataacaaaataaaatttaagaatatgtttttcaccctcttcaagcaccctacagtattttagattatagaatttaaacag |
320 |
Q |
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| T |
40568546 |
ggttcgggtgtatatgtcatataacaaaataaaatttaagaatatgtttttcac----------cgccctacagtattttagattatagaatttaaacag |
40568457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 40572306 - 40572273
Alignment:
| Q |
177 |
ttgttttgttttggtggatgtgtgggggttgggt |
210 |
Q |
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| T |
40572306 |
ttgttttgttttggtggatgtgtgggggttgggt |
40572273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 6442185 - 6442265
Alignment:
| Q |
68 |
aaattaacagttagaacattttagttggcaattaaaatcacaaactaacaataagaattattctaatttcaatttgttttg |
148 |
Q |
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| T |
6442185 |
aaattaacaaatagaaaatcttacttggcaattaaaatcataaattaacaataagcattattttaatttcagtttgttttg |
6442265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 18650092 - 18650135
Alignment:
| Q |
79 |
tagaacattttagttggcaattaaaatcacaaactaacaataag |
122 |
Q |
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| T |
18650092 |
tagaaaattttagttggcaattaaaatcacaaattaacaataag |
18650135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 5922477 - 5922428
Alignment:
| Q |
62 |
aattataaattaacagttagaacattttagttggcaattaaaatcacaaa |
111 |
Q |
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| T |
5922477 |
aattacaaattaacaattagaaaatttgagttggcaattaaaatcacaaa |
5922428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 16636887 - 16636940
Alignment:
| Q |
56 |
ttgaataattataaattaacagttagaacattttagttggcaattaaaatcaca |
109 |
Q |
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| T |
16636887 |
ttgaacaattataaattaacaattagaaaattttagttgataattaaaatcaca |
16636940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 17458751 - 17458698
Alignment:
| Q |
56 |
ttgaataattataaattaacagttagaacattttagttggcaattaaaatcaca |
109 |
Q |
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| T |
17458751 |
ttgaacaattataaattaacaattagaaaattttagttgataattaaaatcaca |
17458698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 17594463 - 17594516
Alignment:
| Q |
56 |
ttgaataattataaattaacagttagaacattttagttggcaattaaaatcaca |
109 |
Q |
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| T |
17594463 |
ttgaacaattataaattaacaattagaaaattttagttgataattaaaatcaca |
17594516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 33530786 - 33530843
Alignment:
| Q |
91 |
gttggcaattaaaatcacaaactaacaataagaattattctaatttcaatttgttttg |
148 |
Q |
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|||| ||||||||||||||| |||||||||| |||||| |||||| | ||||||||| |
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| T |
33530786 |
gttgtcaattaaaatcacaagttaacaataagcattattttaattttagtttgttttg |
33530843 |
T |
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