View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15434_low_19 (Length: 342)

Name: NF15434_low_19
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15434_low_19
NF15434_low_19
[»] chr7 (9 HSPs)
chr7 (55-308)||(28063236-28063489)
chr7 (16-56)||(39757251-39757291)
chr7 (16-58)||(33342983-33343025)
chr7 (16-57)||(9331957-9331998)
chr7 (17-58)||(19889335-19889376)
chr7 (16-57)||(34270261-34270302)
chr7 (19-52)||(39869123-39869156)
chr7 (18-54)||(19868112-19868148)
chr7 (17-57)||(36548602-36548642)
[»] chr5 (8 HSPs)
chr5 (19-54)||(23995566-23995601)
chr5 (16-57)||(2795519-2795560)
chr5 (19-52)||(15241237-15241270)
chr5 (16-57)||(36597575-36597616)
chr5 (17-57)||(12642135-12642175)
chr5 (16-52)||(30839782-30839818)
chr5 (16-52)||(31366093-31366129)
chr5 (16-52)||(40512952-40512988)
[»] chr8 (7 HSPs)
chr8 (16-57)||(2161383-2161424)
chr8 (19-56)||(35678419-35678456)
chr8 (26-54)||(1203600-1203628)
chr8 (16-52)||(3306196-3306232)
chr8 (16-52)||(7140600-7140636)
chr8 (16-52)||(10129104-10129140)
chr8 (19-55)||(26682065-26682101)
[»] chr6 (6 HSPs)
chr6 (16-57)||(33017720-33017761)
chr6 (16-52)||(5363034-5363070)
chr6 (16-52)||(14228267-14228303)
chr6 (16-52)||(17552728-17552764)
chr6 (16-52)||(28943910-28943946)
chr6 (19-59)||(29863447-29863487)
[»] chr3 (7 HSPs)
chr3 (26-55)||(1569342-1569371)
chr3 (16-52)||(2571269-2571305)
chr3 (16-52)||(3863330-3863366)
chr3 (17-57)||(11610910-11610950)
chr3 (16-52)||(12515615-12515651)
chr3 (16-52)||(20938057-20938093)
chr3 (18-58)||(43750046-43750086)
[»] chr2 (12 HSPs)
chr2 (29-62)||(11661069-11661102)
chr2 (16-57)||(16126700-16126741)
chr2 (19-52)||(29981369-29981402)
chr2 (19-52)||(34817544-34817577)
chr2 (16-52)||(5583699-5583735)
chr2 (16-52)||(12016667-12016703)
chr2 (16-52)||(16919295-16919331)
chr2 (16-52)||(19228426-19228462)
chr2 (16-52)||(22705455-22705491)
chr2 (16-52)||(26229994-26230030)
chr2 (19-55)||(36909520-36909556)
chr2 (16-52)||(39904189-39904225)
[»] chr1 (5 HSPs)
chr1 (16-57)||(1502861-1502902)
chr1 (16-52)||(313750-313786)
chr1 (16-52)||(23576555-23576591)
chr1 (16-52)||(44918025-44918061)
chr1 (16-52)||(51382372-51382408)
[»] scaffold0061 (1 HSPs)
scaffold0061 (16-52)||(52920-52956)
[»] scaffold0017 (1 HSPs)
scaffold0017 (16-52)||(145678-145714)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-54)||(193376-193412)
[»] chr4 (2 HSPs)
chr4 (16-52)||(9759283-9759319)
chr4 (16-52)||(50352303-50352339)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 55 - 308
Target Start/End: Original strand, 28063236 - 28063489
Alignment:
Q  55 tttactaattagttagggtttattattttacacatgggattgtcctaaatttgctaaactttgttattgaaaatttggaacgactgcattttatctgacc 154  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28063236 tttactaattagtttaggtttattattttacacatgggattgtcctaaatttgctaaactttgttattgaaaatttggaacgactgcattttatgtgacc 28063335  T
Q  155 ttaattttcatcacattaatattttggtttgaattgctattaattggtaatggtgctcattgaataatttaccatgttttgaatctgaattagtcatgtg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28063336 ttaattttcatcacattaatattttggtttgaattgctattaattggtaatggtgctcattgaataatttaccatgttttgaatctgaattagtcatgtg 28063435  T
Q  255 aagttgaaaaggtgcaacgttagggttgggtgctgagaatttgtatatcccttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28063436 aagttgaaaaggtgcaacgttagggttgggtgctgagaatttgtatatcccttt 28063489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 39757251 - 39757291
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactctt 56  Q
    ||||||||| ||||||||||||| |||||||||||||||||    
T  39757251 accttaacatgtgcaatattgcacatgttagacaaactctt 39757291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 33343025 - 33342983
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttta 58  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||    
T  33343025 accttaacatgtgcaatattgcacatgttagacaaacccttta 33342983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 9331998 - 9331957
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  9331998 accttaacatgtgcaatattgcacatgttagacaaacccttt 9331957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 19889376 - 19889335
Alignment:
Q  17 ccttaacacgtgcaatattgcatatgttagacaaactcttta 58  Q
    |||||||| ||||||||||||| ||||||||||||| |||||    
T  19889376 ccttaacatgtgcaatattgcacatgttagacaaacccttta 19889335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 34270302 - 34270261
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  34270302 accttaacatgtgcaatattgcacatgttagacaaacccttt 34270261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 39869156 - 39869123
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaac 52  Q
    |||||| |||||||||||||||||||||||||||    
T  39869156 ttaacatgtgcaatattgcatatgttagacaaac 39869123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 19868148 - 19868112
Alignment:
Q  18 cttaacacgtgcaatattgcatatgttagacaaactc 54  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  19868148 cttaacatgtgcaatattgcacatgttagacaaactc 19868112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 36548602 - 36548642
Alignment:
Q  17 ccttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  36548602 ccttaacatgtgcaatattgcacatgttagacaaattcttt 36548642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 23995566 - 23995601
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaactc 54  Q
    |||||| |||||||||||||||||||||||||||||    
T  23995566 ttaacatgtgcaatattgcatatgttagacaaactc 23995601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 2795560 - 2795519
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  2795560 accttaacatgtgcaatattgcacatgttagacaaacccttt 2795519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 15241237 - 15241270
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaac 52  Q
    |||||| |||||||||||||||||||||||||||    
T  15241237 ttaacatgtgcaatattgcatatgttagacaaac 15241270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 36597616 - 36597575
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  36597616 accttaacatgtgcaatattgcacatgttagacaaacccttt 36597575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 12642135 - 12642175
Alignment:
Q  17 ccttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    |||||||| || |||||||||| ||||||||||||||||||    
T  12642135 ccttaacatgtacaatattgcacatgttagacaaactcttt 12642175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 30839818 - 30839782
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  30839818 accttaacatgtgcaatattgcacatgttagacaaac 30839782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 31366093 - 31366129
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  31366093 accttaacatgtgcaatattgcacatgttagacaaac 31366129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 40512988 - 40512952
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  40512988 accttaacatgtgcaatattgcacatgttagacaaac 40512952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 2161424 - 2161383
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  2161424 accttaacatgtgcaatattgcacatgttagacaaacccttt 2161383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 35678419 - 35678456
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaactctt 56  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  35678419 ttaacatgtgcaatattgcacatgttagacaaactctt 35678456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 1203628 - 1203600
Alignment:
Q  26 gtgcaatattgcatatgttagacaaactc 54  Q
    |||||||||||||||||||||||||||||    
T  1203628 gtgcaatattgcatatgttagacaaactc 1203600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 3306196 - 3306232
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  3306196 accttaacatgtgcaatattgcacatgttagacaaac 3306232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 7140600 - 7140636
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  7140600 accttaacatgtgcaatattgcacatgttagacaaac 7140636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 10129140 - 10129104
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  10129140 accttaacatgtgcaatattgcacatgttagacaaac 10129104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 26682101 - 26682065
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaactct 55  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  26682101 ttaacatgtgcaatattgcacatgttagacaaactct 26682065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 33017761 - 33017720
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  33017761 accttaacatgtgcaatattgcacatgttagacaaacccttt 33017720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 5363034 - 5363070
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  5363034 accttaacatgtgcaatattgcacatgttagacaaac 5363070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 14228267 - 14228303
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  14228267 accttaacatgtgcaatattgcacatgttagacaaac 14228303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 17552728 - 17552764
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  17552728 accttaacatgtgcaatattgcacatgttagacaaac 17552764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 28943910 - 28943946
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  28943910 accttaacatgtgcaatattgcacatgttagacaaac 28943946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 29863447 - 29863487
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaactctttac 59  Q
    |||||| ||||||||||||| ||||||||||||| ||||||    
T  29863447 ttaacatgtgcaatattgcacatgttagacaaaccctttac 29863487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 1569342 - 1569371
Alignment:
Q  26 gtgcaatattgcatatgttagacaaactct 55  Q
    ||||||||||||||||||||||||||||||    
T  1569342 gtgcaatattgcatatgttagacaaactct 1569371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 2571305 - 2571269
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  2571305 accttaacatgtgcaatattgcacatgttagacaaac 2571269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 3863366 - 3863330
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  3863366 accttaacatgtgcaatattgcacatgttagacaaac 3863330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11610950 - 11610910
Alignment:
Q  17 ccttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  11610950 ccttaacatgtgcaatattgcacatgttagacaaacccttt 11610910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 12515615 - 12515651
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  12515615 accttaacatgtgcaatattgcacatgttagacaaac 12515651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 20938093 - 20938057
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  20938093 accttaacatgtgcaatattgcacatgttagacaaac 20938057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 43750086 - 43750046
Alignment:
Q  18 cttaacacgtgcaatattgcatatgttagacaaactcttta 58  Q
    ||||||| ||||||||||||  |||||||||||||||||||    
T  43750086 cttaacatgtgcaatattgcccatgttagacaaactcttta 43750046  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 11661069 - 11661102
Alignment:
Q  29 caatattgcatatgttagacaaactctttactaa 62  Q
    |||||||||||||||||||||||||||| |||||    
T  11661069 caatattgcatatgttagacaaactcttaactaa 11661102  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 16126700 - 16126741
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  16126700 accttaacatgtgcaatattgcacatgttagacaaacccttt 16126741  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 29981369 - 29981402
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaac 52  Q
    |||||| |||||||||||||||||||||||||||    
T  29981369 ttaacatgtgcaatattgcatatgttagacaaac 29981402  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 34817577 - 34817544
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaac 52  Q
    |||| |||||||||||||||||||||||||||||    
T  34817577 ttaatacgtgcaatattgcatatgttagacaaac 34817544  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 5583699 - 5583735
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  5583699 accttaacatgtgcaatattgcacatgttagacaaac 5583735  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 12016703 - 12016667
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  12016703 accttaacatgtgcaatattgcacatgttagacaaac 12016667  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 16919295 - 16919331
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  16919295 accttaacatgtgcaatattgcacatgttagacaaac 16919331  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 19228462 - 19228426
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  19228462 accttaacatgtgcaatattgcacatgttagacaaac 19228426  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 22705491 - 22705455
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  22705491 accttaacatgtgcaatattgcacatgttagacaaac 22705455  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 26229994 - 26230030
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  26229994 accttaacatgtgcaatattgcacatgttagacaaac 26230030  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 36909520 - 36909556
Alignment:
Q  19 ttaacacgtgcaatattgcatatgttagacaaactct 55  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  36909520 ttaacatgtgtaatattgcatatgttagacaaactct 36909556  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 39904189 - 39904225
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  39904189 accttaacatgtgcaatattgcacatgttagacaaac 39904225  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 1502861 - 1502902
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaactcttt 57  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||    
T  1502861 accttaacatgtgcaatattgcacatgttagacaaacccttt 1502902  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 313786 - 313750
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  313786 accttaacatgtgcaatattgcacatgttagacaaac 313750  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 23576555 - 23576591
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  23576555 accttaacatgtgcaatattgcagatgttagacaaac 23576591  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 44918061 - 44918025
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  44918061 accttaacatgtgcaatattgcacatgttagacaaac 44918025  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 51382408 - 51382372
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  51382408 accttaacatgtgcaatattgcacatgttagacaaac 51382372  T

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Target: scaffold0061 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 52920 - 52956
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  52920 accttaacatgtgcaatattgcacatgttagacaaac 52956  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 145714 - 145678
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  145714 accttaacatgtgcaatattgcacatgttagacaaac 145678  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 193376 - 193412
Alignment:
Q  18 cttaacacgtgcaatattgcatatgttagacaaactc 54  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  193376 cttaacatgtgcaatattgcacatgttagacaaactc 193412  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 9759283 - 9759319
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  9759283 accttaacatgtgcaatattgcacatgttagacaaac 9759319  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 50352339 - 50352303
Alignment:
Q  16 accttaacacgtgcaatattgcatatgttagacaaac 52  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  50352339 accttaacatgtgcaatattgcacatgttagacaaac 50352303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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