View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_21 (Length: 311)
Name: NF15434_low_21
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 28 - 294
Target Start/End: Original strand, 173455 - 173721
Alignment:
| Q |
28 |
ttgtaaacaaagctaagagttaccaagattttcaatcaattgagttttggctagatgaaatatctgtccttaaaccaccacgcaattgaaagttttaaat |
127 |
Q |
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| T |
173455 |
ttgtaagcaaagctaagagttaccaagattttcaatcaattgagttttggctagatgaaatatctgtccttaaaccaccacgcaattgaaagttttaaat |
173554 |
T |
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| Q |
128 |
aaactacccttatttaaataaatacatttttcaagaattcctaacaaaatacacactgttagtttctttgacttttctaggttttacttctatataaagc |
227 |
Q |
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| T |
173555 |
aaactacccttatttaaataaatacatttttcaagaattcctaacaaaatacacactgttagtttctttgacttttctaggttttacttctatataaagc |
173654 |
T |
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| Q |
228 |
ataaccctaaagtttaaagagtaaagggagatcttagaactttcagagttaggagcttggaactaac |
294 |
Q |
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| T |
173655 |
ataaccctaaagtttaaagagtaaagggagatcttagaactttcagagttaggagcttggaactaac |
173721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 599018 - 599140
Alignment:
| Q |
155 |
ttttcaagaattcctaacaaaatacacactgttagtttctttgacttttctaggttttacttctatataaagcataaccctaaagtttaaagagtaaag- |
253 |
Q |
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||||||||||||||||| ||||| ||| ||| ||||||||||||||||||| |||||||||| ||| | | |||||||||||||||||| || ||||| |
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| T |
599018 |
ttttcaagaattcctaataaaatgcactgtgtgagtttctttgacttttctaagttttacttcaataaatatcataaccctaaagtttaaggactaaaga |
599117 |
T |
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| Q |
254 |
---ggagatcttagaactttcag |
273 |
Q |
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||||||||||||||||||| |
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| T |
599118 |
gaaagagatcttagaactttcag |
599140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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