View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_24 (Length: 280)
Name: NF15434_low_24
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 20496462 - 20496196
Alignment:
| Q |
1 |
ttgtaaatcaataagataatgctctcagaagtagagcagaaaaagaatttgaagctgattttcaatcaatggacacaacaattccttgtgggtcaagctc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20496462 |
ttgtaaatcaatatgataatgctctcagaagtagagcagaaaaagaatttgaagctgattttcaatcaatggacacaacaattccttgtgggtcaagctc |
20496363 |
T |
|
| Q |
101 |
gtcgatcgaaaagcaattccaagaagaatatactcatgcgaagtttaaggaggttcaagctgaattcagagctaaaatgaattgtgttacctccttaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20496362 |
gtcgatcgaaaagcaattccaagaagaatatactcatgcgaagtttaaggaggttcaagctgaattcagagctaaaatgaattgtgttacctccttaaat |
20496263 |
T |
|
| Q |
201 |
atcgtggaaggtaaccttgctatttaccacgtgttggaggagatgttaattggagatagaagaaaag |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20496262 |
atcgtggaaggtaaccttgctatttaccacgtgttggaggagatgttaattggagatagaagaaaag |
20496196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 18083298 - 18083121
Alignment:
| Q |
9 |
caataagataatgctctcagaagtagagcagaaaaagaatttgaagctgattttcaatcaatggacacaacaattccttgtgggtcaagctcgtcgatcg |
108 |
Q |
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||||| |||||||||||| ||||| |||||||||||||||||||||| |||||| | || ||| | || |||||| |||| ||||||| |||||| || | |
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| T |
18083298 |
caatatgataatgctctccgaagtcgagcagaaaaagaatttgaagcagattttaattcgatgaataccacaatttcttgcgggtcaaactcgtcaattg |
18083199 |
T |
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| Q |
109 |
aaaagcaattccaagaagaatatactcatgcgaagtttaaggaggttcaagctgaattcagagctaaaatgaattgtg |
186 |
Q |
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| T |
18083198 |
aaaagcaattccaaggtgagtatactcatgctaaatttaaggaggttcaagctgaatttagatctaaaatgaattgtg |
18083121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 33359039 - 33358862
Alignment:
| Q |
9 |
caataagataatgctctcagaagtagagcagaaaaagaatttgaagctgattttcaatcaatggacacaacaattccttgtgggtcaagctcgtcgatcg |
108 |
Q |
| |
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||||| |||||||||||| ||||| |||||||||||||||||||||| |||||| | || ||| | || |||||| |||| ||||||| |||||| || | |
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| T |
33359039 |
caatatgataatgctctccgaagtcgagcagaaaaagaatttgaagcagattttaattcgatgaataccacaatttcttgcgggtcaaactcgtcaattg |
33358940 |
T |
|
| Q |
109 |
aaaagcaattccaagaagaatatactcatgcgaagtttaaggaggttcaagctgaattcagagctaaaatgaattgtg |
186 |
Q |
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||||||||||||||| || ||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
33358939 |
aaaagcaattccaaggtgagtatactcatgctaaatttaaggaggttcaagctgaatttagatctaaaatgaattgtg |
33358862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 38778032 - 38778217
Alignment:
| Q |
1 |
ttgtaaatcaataagataatgctctcagaagtagagcagaaaaagaatttgaagctgattttcaatcaatggacacaacaattccttgtgggtcaagctc |
100 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||| |||||||||||||||||||||| |||||| | ||| | || || |||||||| |||| ||||| ||| |
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| T |
38778032 |
ttgtaaagcaatatgataatgctcttagtagtcgagcagaaaaagaatttgaagcagattttaattcactagatactacaattccgtgtgtgtcaaactc |
38778131 |
T |
|
| Q |
101 |
gtcgatcgaaaagcaattccaagaagaatatactcatgcgaagtttaaggaggttcaagctgaattcagagctaaaatgaattgtg |
186 |
Q |
| |
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||| || ||||||||||| |||| || || |||||||| || || || || |||||||||||||||| | | ||||||||||||| |
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| T |
38778132 |
gtccattgaaaagcaattgcaaggtgagtacactcatgccaaattcaaagaagttcaagctgaattcatatccaaaatgaattgtg |
38778217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 37603140 - 37602955
Alignment:
| Q |
1 |
ttgtaaatcaataagataatgctctcagaagtagagcagaaaaagaatttgaagctgattttcaatcaatggacacaacaattccttgtgggtcaagctc |
100 |
Q |
| |
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||||||| ||||| |||||||||||| ||||| |||||||||| ||||||||||| |||||| || ||| | || |||||| |||| || |||| ||| |
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| T |
37603140 |
ttgtaaaacaatatgataatgctctccgaagtcgagcagaaaaggaatttgaagcagattttacttcgatgaataccacaatttcttgcggttcaaactc |
37603041 |
T |
|
| Q |
101 |
gtcgatcgaaaagcaattccaagaagaatatactcatgcgaagtttaaggaggttcaagctgaattcagagctaaaatgaattgtg |
186 |
Q |
| |
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|| || |||||||||||||||| | || |||||||| || ||||||||| |||||| |||||| ||| ||||||||||||||| |
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| T |
37603040 |
atcaattgaaaagcaattccaaggtcagtacactcatgctaaatttaaggagcttcaagttgaatttagatctaaaatgaattgtg |
37602955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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