View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15434_low_26 (Length: 252)

Name: NF15434_low_26
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15434_low_26
NF15434_low_26
[»] chr3 (9 HSPs)
chr3 (72-235)||(53282206-53282369)
chr3 (72-235)||(36950159-36950322)
chr3 (77-236)||(29703542-29703701)
chr3 (80-235)||(20104235-20104389)
chr3 (78-235)||(5232859-5233015)
chr3 (77-235)||(39833237-39833394)
chr3 (77-139)||(31658826-31658888)
chr3 (77-147)||(50650398-50650468)
chr3 (77-147)||(12938542-12938612)
[»] chr8 (4 HSPs)
chr8 (72-235)||(3879468-3879631)
chr8 (77-235)||(531597-531754)
chr8 (77-196)||(30945459-30945576)
chr8 (80-147)||(13802689-13802756)
[»] chr4 (10 HSPs)
chr4 (77-236)||(15531217-15531376)
chr4 (77-235)||(20133323-20133480)
chr4 (77-149)||(28679506-28679578)
chr4 (77-200)||(45989616-45989728)
chr4 (77-196)||(55919393-55919512)
chr4 (77-200)||(42069052-42069164)
chr4 (77-200)||(47031465-47031577)
chr4 (77-139)||(42976479-42976541)
chr4 (77-147)||(27293087-27293157)
chr4 (77-147)||(4919155-4919225)
[»] chr5 (7 HSPs)
chr5 (80-236)||(39884607-39884763)
chr5 (77-235)||(24788330-24788487)
chr5 (77-147)||(1828553-1828623)
chr5 (77-147)||(40314018-40314088)
chr5 (77-147)||(41413449-41413519)
chr5 (77-133)||(30625019-30625075)
chr5 (80-139)||(31482078-31482137)
[»] chr2 (9 HSPs)
chr2 (72-235)||(7089137-7089300)
chr2 (72-234)||(33755071-33755233)
chr2 (78-235)||(37078860-37079016)
chr2 (77-235)||(17690517-17690674)
chr2 (77-235)||(37261703-37261860)
chr2 (77-196)||(15330686-15330805)
chr2 (77-235)||(14810121-14810278)
chr2 (77-152)||(16429859-16429934)
chr2 (80-147)||(18977120-18977187)
[»] chr1 (6 HSPs)
chr1 (77-235)||(12981434-12981591)
chr1 (77-234)||(45348274-45348430)
chr1 (77-139)||(45325641-45325703)
chr1 (77-136)||(27286316-27286375)
chr1 (77-147)||(52385820-52385890)
chr1 (77-147)||(39241699-39241766)
[»] scaffold0166 (1 HSPs)
scaffold0166 (77-235)||(30713-30870)
[»] chr7 (8 HSPs)
chr7 (77-235)||(45972336-45972493)
chr7 (78-235)||(47327855-47328011)
chr7 (77-200)||(6442584-6442696)
chr7 (77-196)||(29243331-29243448)
chr7 (77-200)||(34094065-34094177)
chr7 (77-147)||(19436813-19436883)
chr7 (77-147)||(29833951-29834021)
chr7 (207-235)||(29258441-29258469)
[»] chr6 (3 HSPs)
chr6 (77-147)||(28138046-28138116)
chr6 (77-136)||(12938794-12938853)
chr6 (77-147)||(33694921-33694991)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 53282369 - 53282206
Alignment:
Q  72 tactgatcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactg 171  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| || |||||||||||| ||||||||||||||||||    
T  53282369 tactaatcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagataatgaaataaagttttccttttacttacggtactg 53282270  T
Q  172 tagaccgcctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||||||||||||||  |||||| ||||||  ||  |||||||||||||||||||||||||||||    
T  53282269 tagaccgcctgcacaataacataatgcagggtatctgacgtgtcatcacttgaaatctgattgg 53282206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 36950159 - 36950322
Alignment:
Q  72 tactgatcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactg 171  Q
    |||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  36950159 tactaatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaagttttccttctacttacggtactg 36950258  T
Q  172 tagaccgcctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    |||| |||||||||| |||||| ||||||  ||  ||||||||||||||||||||||| |||||    
T  36950259 tagaacgcctgcactctaacataatgcagggtatctgacgtgtcatcacttgaaatctaattgg 36950322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 29703542 - 29703701
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||  || |||||||||||||||| ||    
T  29703542 atcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaac 29703641  T
Q  177 cgcctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattggt 236  Q
    |||||||||| |||||| ||||||  ||   |||||||||||||||||||||||||||||    
T  29703642 cgcctgcactataacataatgcagggtatccgacgtgtcatcacttgaaatctgattggt 29703701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 20104389 - 20104235
Alignment:
Q  80 atgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagaccgc 179  Q
    ||||||||| | | ||||||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||    
T  20104389 atgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaagtttttc-tttactaacggtattgtagaccgc 20104291  T
Q  180 -ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
     || ||||||||||| ||  || ||   |||||||||||||||| ||||||||||||    
T  20104290 actacactgtaacattat-taggatttctgacgtgtcatcacttaaaatctgattgg 20104235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 5233015 - 5232859
Alignment:
Q  78 tcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagacc 177  Q
    ||||||||||| | | ||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||||||||||| || |||||||||| ||||||||    
T  5233015 tcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttc-ttcacttacggtattgtagacc 5232917  T
Q  178 gc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    || || ||||||||||| ||  || ||   |||||||||||||||| ||||||||||||    
T  5232916 gcactacactgtaacattattaag-atctctgacgtgtcatcacttaaaatctgattgg 5232859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 39833237 - 39833394
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  39833237 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 39833335  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  39833336 cgcactacactgaaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 39833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 31658826 - 31658888
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcat 139  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  31658826 atcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcat 31658888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 50650398 - 50650468
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||| ||||| |||||||| | |||||||    
T  50650398 atcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 50650468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 12938612 - 12938542
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||| | ||| ||||||||||||||||| ||||||||||  ||||| |||||||| | |||||||    
T  12938612 atcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 12938542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 3879468 - 3879631
Alignment:
Q  72 tactgatcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactg 171  Q
    |||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  3879468 tactaatcatgtgtagacaatataccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaagtttttcttctacttacagtactg 3879567  T
Q  172 tagaccgcctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||||||||||||||  |||||| ||||||  ||  ||||||||||||||||||||||| |||||    
T  3879568 tagaccgcctgcacactaacataatgcagggtatctgacgtgtcatcacttgaaatctaattgg 3879631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 531754 - 531597
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| || || |||||||| ||||| || ||||||| ||| ||||||    
T  531754 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaataaag-ttttccttcacttacgctaccgtagac 531656  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  531655 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 531597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 30945459 - 30945576
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| |||||||||||  |||||| ||||||||| |||||||||||||||| |||||||| ||||| || ||||||| ||| ||||||    
T  30945459 atcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaag-ttttcattcacttacgctaccgtagac 30945555  T
Q  177 cgc-ctgcactgtaacatgat 196  Q
    ||| || ||||| ||||||||    
T  30945556 cgcactacactggaacatgat 30945576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 13802689 - 13802756
Alignment:
Q  80 atgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    ||||||||| ||| ||||| ||||  |||||||||||  |||| ||||||||||||||||||| ||||    
T  13802689 atgtgtagatggtgtaccataatacgatagagaccaaacaaatctaaccattaagatcatcaagtaaa 13802756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 15531217 - 15531376
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||  || |||||||||||||||| ||    
T  15531217 atcatgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaac 15531316  T
Q  177 cgcctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattggt 236  Q
    ||||||||||||||||| ||||||  ||  |||||| |||||||||||||||||||||||    
T  15531317 cgcctgcactgtaacataatgcagggtatctgacgtatcatcacttgaaatctgattggt 15531376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 20133480 - 20133323
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  20133480 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 20133382  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  20133381 cgcactacactgaaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 20133323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 28679578 - 28679506
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagt 149  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  28679578 atcatgtgtagatggtataccacaataacatagagatcaagtaaatttaactattaagatcataaaataaagt 28679506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 45989616 - 45989728
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||           | | ||| |||||||||||||||||||    
T  45989616 atcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatca-----------tgtccttctacttacggtactgtagac 45989704  T
Q  177 cgcctgcactgtaacatgatgcag 200  Q
    ||||| ||||||||||||||||||    
T  45989705 cgcctacactgtaacatgatgcag 45989728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 55919393 - 55919512
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||| ||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  55919393 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 55919491  T
Q  177 cgc-ctgcactgtaacatgat 196  Q
    ||| || ||||| ||||||||    
T  55919492 cgcactacactggaacatgat 55919512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 42069052 - 42069164
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| |||||||||           | | ||| |||||||||||||||||||    
T  42069052 atcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatca-----------tgtccttctacttacggtactgtagac 42069140  T
Q  177 cgcctgcactgtaacatgatgcag 200  Q
    ||||| ||||||||||||||||||    
T  42069141 cgcctacactgtaacatgatgcag 42069164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 47031465 - 47031577
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||           | | ||| |||||||||||||||||||    
T  47031465 atcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatca-----------tgtccttctacttacggtactgtagac 47031553  T
Q  177 cgcctgcactgtaacatgatgcag 200  Q
    ||||| ||||||||||| ||||||    
T  47031554 cgcctacactgtaacataatgcag 47031577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 42976541 - 42976479
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcat 139  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  42976541 atcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcat 42976479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 27293157 - 27293087
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||| ||||| |||||||| | |||||||    
T  27293157 atcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaa 27293087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 4919225 - 4919155
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    ||||||||||||  || |||||||||| ||||||||||||  |||| |||||||||||||| | |||||||    
T  4919225 atcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaataaa 4919155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 39884763 - 39884607
Alignment:
Q  80 atgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagaccgc 179  Q
    |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||  || |||||||||||||||| |||||    
T  39884763 atgtgtagacagtataccacaataacatagagactaagtaaatctaaccattaagatcatgaaataaagttttcattctacttacggtactgtaaaccgc 39884664  T
Q  180 ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattggt 236  Q
    |||||||||||||| |||||   ||  ||||||||||||||||||||||||||||||    
T  39884663 ctgcactgtaacataatgcatggtatctgacgtgtcatcacttgaaatctgattggt 39884607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 24788330 - 24788487
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||  |||| || ||||||| ||| ||||||    
T  24788330 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaag-ctttccttcacttacgctaccgtagac 24788428  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  24788429 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 24788487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 1828623 - 1828553
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||| | ||| ||||||||||||||||| ||||||||||  ||||| |||||||| | |||||||    
T  1828623 atcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 1828553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 40314088 - 40314018
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||| | ||| ||||||||||||||||| ||||||||||  ||||| |||||||| | |||||||    
T  40314088 atcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 40314018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 41413449 - 41413519
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||| | ||| ||||||||||||||||| ||||||||||  ||||| |||||||| | |||||||    
T  41413449 atcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaa 41413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 30625075 - 30625019
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaa 133  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||| ||||| ||||    
T  30625075 atcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaa 30625019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 31482078 - 31482137
Alignment:
Q  80 atgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcat 139  Q
    ||||||||| ||| ||||| |||| ||||||||||||  |||| ||||||||||||||||    
T  31482078 atgtgtagatggtgtaccataataccatagagaccaaacaaatctaaccattaagatcat 31482137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 7089300 - 7089137
Alignment:
Q  72 tactgatcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactg 171  Q
    |||| |||||||||| ||  ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  7089300 tactaatcatgtgtaaacaatataccacaataacatagagatcaagtaaatctaaccattaagatcatgaaataaagttttccttctacttacggtactg 7089201  T
Q  172 tagaccgcctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||||||||||||||| |||||| ||||||  ||  ||||||||||||||||||||||| |||||    
T  7089200 tagaccgcctgcactctaacataatgcagggtatctgacgtgtcatcacttgaaatctaattgg 7089137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 33755071 - 33755233
Alignment:
Q  72 tactgatcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactg 171  Q
    |||| |||||||||||||  ||||||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||     
T  33755071 tactaatcatgtgtagacaatataccacaataacatatagaccaagtaaatctaaccattaatatcatgaaataaagtttttcttctacttacggtactc 33755170  T
Q  172 tagaccgcctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattg 234  Q
    ||||||||||||||| |||||| ||||||  ||  ||||||||||||||||||||||| ||||    
T  33755171 tagaccgcctgcactctaacataatgcagggtatctgacgtgtcatcacttgaaatctaattg 33755233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 37079016 - 37078860
Alignment:
Q  78 tcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagacc 177  Q
    ||||||||||| | | ||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||||||||||| || |||||||||| ||||||||    
T  37079016 tcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttc-ttcacttacggtattgtagacc 37078918  T
Q  178 gc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    || || ||||||||||| ||  || ||   |||||||||||||||| ||||||||||||    
T  37078917 gcactacactgtaacattattaag-atttctgacgtgtcatcacttaaaatctgattgg 37078860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 17690674 - 17690517
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  17690674 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaag-ttttccttcacttacgctaccgtagac 17690576  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  17690575 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 17690517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 37261703 - 37261860
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  37261703 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 37261801  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  37261802 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 37261860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 15330805 - 15330686
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  15330805 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 15330707  T
Q  177 cgc-ctgcactgtaacatgat 196  Q
    ||| || ||||| ||||||||    
T  15330706 cgcactacactggaacatgat 15330686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 14810121 - 14810278
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||| ||||| |||||||||| ||||| |||||||| ||||| || ||||||| |||  |||||    
T  14810121 atcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccatagac 14810219  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  14810220 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 14810278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 16429934 - 16429859
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttt 152  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||    
T  16429934 atcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaataaagtttt 16429859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 18977120 - 18977187
Alignment:
Q  80 atgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    ||||||||| ||| |||||||||||||||||||| |||||||| ||||  |||||||||| |||||||    
T  18977120 atgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaataaa 18977187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 12981591 - 12981434
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  12981591 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 12981493  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  12981492 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 12981434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 234
Target Start/End: Original strand, 45348274 - 45348430
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  45348274 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 45348372  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattg 234  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || |||||||||||    
T  45348373 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattg 45348430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 45325641 - 45325703
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcat 139  Q
    |||||||||||| |||||||||||||||||||||||| || ||||| ||||| ||||||||||    
T  45325641 atcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatcat 45325703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 27286375 - 27286316
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagat 136  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||| ||||| |||||||    
T  27286375 atcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagat 27286316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 52385820 - 52385890
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||||| ||| ||||||||||||||||||| |||  |||| ||||| | |||||| | |||||||    
T  52385820 atcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaataaa 52385890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 39241766 - 39241699
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||||| ||| ||||||||||||| |||   || |||||| ||||| |||||||||| |||||||    
T  39241766 atcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaa 39241699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 30713 - 30870
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||  |||| || ||||||| ||| ||||||    
T  30713 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcataaaataaag-ctttccttcacttacgctaccgtagac 30811  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||| ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  30812 cgcactacactggaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 30870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 235
Target Start/End: Complemental strand, 45972493 - 45972336
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| || ||||||| ||| ||||||    
T  45972493 atcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaag-ttttccttcacttacgctaccgtagac 45972395  T
Q  177 cgc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    ||| || ||||  ||||||||  ||  |  |||||||||||||| || ||||||||||||    
T  45972394 cgcactacactagaacatgat-tagggtttttgacgtgtcatcatttaaaatctgattgg 45972336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 47328011 - 47327855
Alignment:
Q  78 tcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagacc 177  Q
    ||||||||||| | | ||||||||||||||| ||| ||||||||| |||| ||||||||||| |||||||||||||| || |||||| ||| |||||||     
T  47328011 tcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaagtttttc-ttcacttacagtattgtagact 47327913  T
Q  178 gc-ctgcactgtaacatgatgcagaataattgacgtgtcatcacttgaaatctgattgg 235  Q
    || || ||||||||||| ||  || ||   |||||||||||| ||| ||||||||||||    
T  47327912 gcactacactgtaacattattaag-atttctgacgtgtcatcgcttaaaatctgattgg 47327855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 6442696 - 6442584
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||| ||||  |||||||||           | | ||| |||||||||||||||||||    
T  6442696 atcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatca-----------tgtccttctacttacggtactgtagac 6442608  T
Q  177 cgcctgcactgtaacatgatgcag 200  Q
    ||||| ||||||||||||||||||    
T  6442607 cgcctacactgtaacatgatgcag 6442584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 29243448 - 29243331
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||| |||||||||||  |||||| ||||||||| |||||||||||||||| |||||||| ||||| || ||||||| ||| ||||||    
T  29243448 atcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaag-ttttcattcacttacgctaccgtagac 29243352  T
Q  177 cgc-ctgcactgtaacatgat 196  Q
    ||| || ||||| ||||||||    
T  29243351 cgcactacactggaacatgat 29243331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 34094177 - 34094065
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaagtttttcttttacttacggtactgtagac 176  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| ||||||| |           | | ||| |||||||||||||||||||    
T  34094177 atcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatta-----------tgtccttctacttacggtactgtagac 34094089  T
Q  177 cgcctgcactgtaacatgatgcag 200  Q
    ||||| ||||||||||||||||||    
T  34094088 cgcctacactgtaacatgatgcag 34094065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 19436883 - 19436813
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||| ||||  |||||||| | |||||||    
T  19436883 atcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaa 19436813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 29833951 - 29834021
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||| ||| ||| |||||||||||||||||||||||  |||| ||||  |||||||| | |||||||    
T  29833951 atcatgtgcagagggtttaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaa 29834021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 29258469 - 29258441
Alignment:
Q  207 tgacgtgtcatcacttgaaatctgattgg 235  Q
    |||||||||||||||||||||||||||||    
T  29258469 tgacgtgtcatcacttgaaatctgattgg 29258441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 28138046 - 28138116
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    |||||||||||| |   ||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||    
T  28138046 atcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaa 28138116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 12938853 - 12938794
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagat 136  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||| ||||| |||||||    
T  12938853 atcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagat 12938794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 33694991 - 33694921
Alignment:
Q  77 atcatgtgtagacggtataccacaataacatagagaccaagtaaatttaaccattaagatcatcaaataaa 147  Q
    ||||| |||||| ||| ||||||||||| |||||| |||| ||||| ||||  |||||||||| |||||||    
T  33694991 atcatatgtagagggtgtaccacaataatatagaggccaaataaatctaactgttaagatcatgaaataaa 33694921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University