View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_33 (Length: 227)
Name: NF15434_low_33
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_33 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 14243 - 14441
Alignment:
| Q |
27 |
cagtcatcaattacccctttcctgcctcatgttttctc--tccatggtcttggatttctcccttttcagcttcctcctcctttctggtcaccacttccgg |
124 |
Q |
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| T |
14243 |
cagtcatcaattacccctttcctgcctcatgttttctctctccatggtcttggatttctcccttttcagcttcctcctcctttccggtcaccacttccgg |
14342 |
T |
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| Q |
125 |
ccaccttaaacatgttcaagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcattatgggcaccttg |
223 |
Q |
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| T |
14343 |
ccaccttaaacatgttcaagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactattctacttcttcttgcattatgggcaccttg |
14441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 14517 - 14594
Alignment:
| Q |
145 |
aaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcattatgggcacctt |
222 |
Q |
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| T |
14517 |
aaaaacaaacattagatttgtgctcttcatcgttagatctttctattgttttacttctttttgcattttgagcacctt |
14594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 9123389 - 9123201
Alignment:
| Q |
34 |
caattacccctttcctgcctcatgttttctctc--catggtcttggatttctcccttttcagcttcctcctcctttctggtcaccacttccggccacctt |
131 |
Q |
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| T |
9123389 |
caatttcccatttcctgcctcatgttttctctctccatggtctcagatttctcccttttcagcttcctcctcctttccggtcaccacttccggccaccgt |
9123290 |
T |
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| Q |
132 |
aaacatgttcaagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcattatgggcacc |
220 |
Q |
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| T |
9123289 |
gaatatgttcaagaaaaacaaacatcagatttttgttcttcatcgttagatatttccaatgttctacttcttcttgcattctaggcacc |
9123201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 7867406 - 7867589
Alignment:
| Q |
27 |
cagtcatcaattacccctttcctgcctcatgttttctc--tccatggtcttggatttctcccttttcagcttcctcctcctttctggtcaccacttccgg |
124 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
7867406 |
cagtcatcaattacccctttcctggctcatgttttctctctccatggtcttggatttctcctttttcagcttcctcctcct-------------ttccgg |
7867492 |
T |
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| Q |
125 |
ccaccttaaacatgttcaagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcattatgggcaccttg |
223 |
Q |
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| T |
7867493 |
ccaccttaaacatgttcaag-aaaacaaacattagatttatgttcttcatcgttacata-atctactattctacttattcttgcattataggcaccttg |
7867589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 7867662 - 7867742
Alignment:
| Q |
142 |
aagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcattatgggcacctt |
222 |
Q |
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| T |
7867662 |
aagaaaaacaaacattagatctgtgctcttcatcgttagatctttctattgttttacttctttttgcattttgggcacctt |
7867742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 45528772 - 45528676
Alignment:
| Q |
122 |
cggccaccttaaacatgttcaagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcattatgggca |
218 |
Q |
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| T |
45528772 |
cggccaccttgagcatgctcaagaaaagcatacatcggatttgtgttcttcgtgatgagatctttctattgttataattcttcttgcattatgggca |
45528676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 1623625 - 1623725
Alignment:
| Q |
111 |
gtcaccacttccggccaccttaaacatgttcaagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcat |
210 |
Q |
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| T |
1623625 |
gtcaccacttccagccacctataacatgcttaagaaaagaatacattagatttatgttcttcattgtgagatctttctattgttctaattcttcttgcat |
1623724 |
T |
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| Q |
211 |
t |
211 |
Q |
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| T |
1623725 |
t |
1623725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 55516221 - 55516122
Alignment:
| Q |
119 |
ttccggccaccttaaacatgttcaagaaaaacaaacatcagatttgtgttcttcatcgttagatacttctactgttctacttcttcttgcattatgggca |
218 |
Q |
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||||||||||||| | |||| |||||||||||| |||||| |||||| |||||| | | |||| || || |||| || |||||||||||||||||||| |
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| T |
55516221 |
ttccggccaccttgagcatgctcaagaaaaacatacatcaaatttgtcttcttcgtgatgagatctttatattgttataattcttcttgcattatgggca |
55516122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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