View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_4 (Length: 604)
Name: NF15434_low_4
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 11151753 - 11151303
Alignment:
| Q |
20 |
atataatccgaaatgtgtcaatctatacactatattttacttataaaatgatcttatgtgggatttgacagatttcatattctattatctgaaaggtgtt |
119 |
Q |
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| T |
11151753 |
atataatccaaaatgtgtctatctatacactatattttacttataaaatgatcttatgtggggtttgacagatttcatattctattatctaaaaggtgtt |
11151654 |
T |
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| Q |
120 |
cagattgtagttgtcgaaccatatatttacaagcaccgaacatcagtatagctctaggcttgccttcaattttcacattgttcatattatacaatccgaa |
219 |
Q |
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| T |
11151653 |
cagattgtagttgtcgaaccatatatttacaagcaccgaacatcggtatagctctaggcttgccttcaattttcacattgttcatattatacaatccgaa |
11151554 |
T |
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| Q |
220 |
atatggtttggattctataatccaaataaagagtatctatgtaccacttgaatttgaatttttaacctcttcctgtttaaagtctgcatatcaaagctaa |
319 |
Q |
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| T |
11151553 |
atatggtttggattctataattcaaataaagagtatctatgtaccacttgaatttgaatttttaacctcttcctgtttaaagtctgcatatcaaagctaa |
11151454 |
T |
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| Q |
320 |
atgaattgaagaacttcaacaataatagtactataaatgtgaaattcaaaagcatatattctacagtttggttaattgttatccaggtaatgaaacaggg |
419 |
Q |
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| T |
11151453 |
atgaattgaagaacttcaac---aatagtactataaatgtgaaattcaaaagcatatattctacagtttggttaattgttatccaggtaatgaaacaggg |
11151357 |
T |
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| Q |
420 |
tttcttctatgttttttcatttgacattaattttatgtgcagtaatgaagacat |
473 |
Q |
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| T |
11151356 |
tttcttctatgttttttcatttgacattaattttatgttcagtaatgaagacat |
11151303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 535 - 594
Target Start/End: Complemental strand, 11151305 - 11151246
Alignment:
| Q |
535 |
catgaagaattccacaaatcaatattagtagtttaattttaatttctcacttcctatgct |
594 |
Q |
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| T |
11151305 |
catgaagaattccacaaatcaatattagtagtttaattttaatttctcacttcctatgct |
11151246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 580
Target Start/End: Original strand, 11172945 - 11173028
Alignment:
| Q |
501 |
ggatatgaagaagttagttgtaacatataacaatcatgaagaattccacaaatcaa--tattag--tagtttaattttaatttc |
580 |
Q |
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| T |
11172945 |
ggatctgaagaagttagtggaaacatataacaatcatgaacaatctcacaaaccaatttattagtatagtttaatttcaatttc |
11173028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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