View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_5 (Length: 602)
Name: NF15434_low_5
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 14 - 586
Target Start/End: Complemental strand, 42124590 - 42124018
Alignment:
| Q |
14 |
aggtaaagttaatccgacagggattctgccaccagagacaggtgcaattgctagagatgaaaatgattcacgtcctttgcttttccttgctaatgatttt |
113 |
Q |
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| T |
42124590 |
aggtaaagttaatccgacagggattctgccaccagagacaggtgcaattgctagagatgaaaatgattcacgtcctttgcttttccttgctaatgatttt |
42124491 |
T |
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| Q |
114 |
caaaaccgtgttagttcctccaatggagtttcttacgtttttcaaattcaagtaagaccagttccagacgatacacaaggccgcgaggttgcattggatt |
213 |
Q |
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| T |
42124490 |
caaaaccgtgttagttcctccaatggagtttcttacgtttttcaaattcaagtaagaccagttccagacgatacacaaggccgcgaggttgcattggatt |
42124391 |
T |
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| Q |
214 |
gtactaaaccatgggatgaaaatgaattccctttcactgatgttggagagattaacctcaatgaaaatattcctatggaagattcacaaaagcttgagtt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42124390 |
gtactaaaccatgggatgaaaatgaattccctttcactgatgttggagagattaacctcaatgaaaatattcctatggaagattcacaaaagcttgagtt |
42124291 |
T |
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| Q |
314 |
taatccttatcttaaaagcaatgagttggatacaattacagctacttccagcacacaaagtgcttcaattgatcacggccgttcattgatctatgagata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42124290 |
taatccttatcttaaaagcaatgagttggatacaattacagctacttccagcacacaaagtgcttcaattgatcacggccgttcattgatctatgagata |
42124191 |
T |
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| Q |
414 |
tgtcagcacgtgcgcaatagacagccactcccagaagcttggagaaaccttgtacaacaatccaatgttaaggttgacttgtcctgctgtccaatagcat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42124190 |
tgtcagcacgtgcgcaatagacagccactcccagaagcttggagaaaccttgtacaacaatccaatgttaaggttgacttgtcctgctgtccaatagcat |
42124091 |
T |
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| Q |
514 |
catcagctccattacctgaaaaagaaccattgctgaaaaagaaagcgacaccagcattaacattgacaagaac |
586 |
Q |
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| T |
42124090 |
catcagctccattacctgaaaaagaaccattgctgaaaaagaaagcgacaccagcattaacattgacaagaac |
42124018 |
T |
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