View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15434_low_6 (Length: 567)
Name: NF15434_low_6
Description: NF15434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15434_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 43718552 - 43718715
Alignment:
| Q |
1 |
atttgtattacactggcagtgaatttgtgaagctcttgtagggaaactgaatttcaagaaagaggagatgagccaagttgaagaggccatttccaaatca |
100 |
Q |
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| T |
43718552 |
atttgtattacactggcagtgaatttgtgaagctcttgtagggaaactgaatttgaagaaagaggagatgagccaagttgaagaggccatttccaaatca |
43718651 |
T |
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| Q |
101 |
acaatgaaacgcgccacaattcgttatctaatcccgatgcttttctctcctttcattttccctt |
164 |
Q |
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| T |
43718652 |
acaatgaaacgcgccacaattcgttatctaatcccgatgcttttctctcctttcattttccctt |
43718715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 282 - 402
Target Start/End: Original strand, 43718843 - 43718964
Alignment:
| Q |
282 |
aaagttgtatatcactactttcgttttatatatccttgcaaatcttaatttataatattcctctttttt-gggaacttgtaatattcatattcttgtcaa |
380 |
Q |
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| T |
43718843 |
aaagttatatatcactactctcgttttatatatccttgcaaatcttaatttgtaatattcctcttttttagggaacttgtaatattcctattcttgtcaa |
43718942 |
T |
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| Q |
381 |
aaaaatatttttgatattccta |
402 |
Q |
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| T |
43718943 |
aaaactatttttaatattccta |
43718964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 472 - 551
Target Start/End: Original strand, 43719033 - 43719112
Alignment:
| Q |
472 |
aagtcagcctcgtgcagatttaataaattcaaattattaaaaagtgtgtttataagttacacaaggtaagaagacaaaat |
551 |
Q |
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| T |
43719033 |
aagtcagcctcgtgcagatttaataaattcaaattattaaaaagtgtgtttataagttacacaaggtaagaagacaaaat |
43719112 |
T |
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