View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15435_high_2 (Length: 550)
Name: NF15435_high_2
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Complemental strand, 40047248 - 40046724
Alignment:
| Q |
14 |
aatattaacaaatataatttgggagttgtgttatttaaattgattctttttagtacaaagcaatttcacaagaatgtcttcctttttgcatttgttgttt |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40047248 |
aatattaacaaatataattttggagttgtgttatttaaattgattctttttagtacaaagcaatttcacaagaatgtcttcctttttgcatttgttgttt |
40047149 |
T |
|
| Q |
114 |
ttctctttgtaaattgattttgggtaattatgggagggagagagagtagtttatagaaatgcctataaaatcattgaccgtctgatttaactcggcatat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40047148 |
ttctctttgtaaattgattttgggtaattatgggagggagagagagtagtttatagaaaagcctataaaatcattgaccgtctgatttaactcggcatat |
40047049 |
T |
|
| Q |
214 |
ttaaaaatcataaattaaaaatcgtctgattaagattggatgatcgatgatac---actgcaagaacttgatgattgc-gtaaatgcaggtccttctaga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40047048 |
ttaaaaatcataaattaaaaatcgtctgattaagattggatgatcgatgatgcctgactgcaagaacttgatgattgcggtaaatgcaggtccttctaga |
40046949 |
T |
|
| Q |
310 |
ggtccaattggaaattgcttaaaataggttgagttgagtttacattcatgagcttccgcatgggttttactattgaaacaatgttgatgaaacataaaca |
409 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40046948 |
gatccaattggaaattgcttaaaataggttgagttgagtttacattcatgagcttccgcatgggttttactattgaaacaatgttgatgaaacataaaca |
40046849 |
T |
|
| Q |
410 |
aaagaagttagaaaatcattgtctcaaaattcaatttatatacattctctcttgtttttgttgagtggacgttgattacatcattgtctcagccaactgc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40046848 |
aaagaagttagaaaatcattgtctcaaaattcaatttatatacattctctcttgtttttgttgagtggacgttgattacatccttgtctcagccaactgc |
40046749 |
T |
|
| Q |
510 |
ggaaatggaaaagtggagattggga |
534 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40046748 |
ggaaatggaaaagtggagattggga |
40046724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University