View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15435_high_4 (Length: 519)
Name: NF15435_high_4
Description: NF15435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15435_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 16864943 - 16864578
Alignment:
| Q |
9 |
attattctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgtt |
108 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16864943 |
attattctcatttatatcatcgagaggaggcatctcaggatcaatttgatttacttgctcatcagttgtgaattctataacatcatcatcaattagtgtt |
16864844 |
T |
|
| Q |
109 |
gaacttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcat |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16864843 |
gaacttgattgagtgttttcattaccattctagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcat |
16864744 |
T |
|
| Q |
209 |
gtagcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcctctgagagtatgacacatgaac |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16864743 |
gtagcttataagctttttattcttcactcaaaccaagcagaatacacctag---tactcttatcatctaacttcttcctctgagagtctgacacatgaac |
16864647 |
T |
|
| Q |
309 |
ataagaaatacatcccaaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc |
377 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16864646 |
ataagaaatacatccaaaaattctaaaatactttactgaaggttgcacaccactccacatgaacatatc |
16864578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 382 - 498
Target Start/End: Complemental strand, 16863007 - 16862891
Alignment:
| Q |
382 |
gcggaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaaga |
481 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16863007 |
gcggaaccttgatacttcctacgcattgcatcccaaatatccttagctgaatctttaaccaatctagtttccatgattgttctatcaatggattgaaaga |
16862908 |
T |
|
| Q |
482 |
gatagtttttcacctta |
498 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
16862907 |
gatagtttttcacctta |
16862891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 20543870 - 20543659
Alignment:
| Q |
43 |
tcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaacttgattgagtgttttcattatcattccagt |
142 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||| |
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|
| T |
20543870 |
tcaggttcagtttgatttactggctcatcagttgtaaattctatcacatcatcatctatcaaggttgaacttgattgagtgttttcattcccattccagt |
20543771 |
T |
|
| Q |
143 |
tccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgtagcttataagcttttgattcttcactcaaacc |
242 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| |||| |||||||||||||| || || |||| | |||||||||||||||||||||||||||||| |
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|
| T |
20543770 |
tccatccttgtgtttcttcaaatacaacatccctgctaattaccactttcttattcttggggtcatacaacttataagcttttgattcttcactcaaacc |
20543671 |
T |
|
| Q |
243 |
aagcagaataca |
254 |
Q |
| |
|
||| |||||||| |
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|
| T |
20543670 |
aagtagaataca |
20543659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 491
Target Start/End: Complemental strand, 20541956 - 20541850
Alignment:
| Q |
385 |
gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat |
484 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||||||| | ||||| |||||||| || |||||||||||| ||||||||||||||||||| |||| |
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|
| T |
20541956 |
gaaccttgatactttctacgcatagcatcccaaatatcctttgttgaatctttaaccagaatggtttccatgatttttctatcaatggattgaaaaagat |
20541857 |
T |
|
| Q |
485 |
agttttt |
491 |
Q |
| |
|
||||||| |
|
|
| T |
20541856 |
agttttt |
20541850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 40611401 - 40611644
Alignment:
| Q |
12 |
attctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagtt-gtgaattctataacatcatcatcaattagtgttga |
110 |
Q |
| |
|
|||| ||||| ||||||||| | || ||| ||||| ||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| || | ||||| |
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|
| T |
40611401 |
attcccatttgtatcatcaataccagtcatttcaggttcactttgatttactggctcatcagtttgtgaattctatcacatcatcatctatcaaggttga |
40611500 |
T |
|
| Q |
111 |
acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||| |||| |||||||||||||| || || |||| |
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|
| T |
40611501 |
acttgattgagtgttttcattcccattccagttccatccttgtgtttcttcaaaatcaaaatccctgctaattaccactttcttatttttggggtcatac |
40611600 |
T |
|
| Q |
211 |
agcttataagcttttgattcttcactcaaaccaagcagaataca |
254 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
40611601 |
aacttataagcttttgattcttcacttaaaccaagtagaataca |
40611644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 385 - 497
Target Start/End: Original strand, 40613366 - 40613478
Alignment:
| Q |
385 |
gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat |
484 |
Q |
| |
|
|||||||||||||| || ||||| | ||||||||||||||| ||||||| |||||||| || ||||| |||||| ||||||||||||||||||| |||| |
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|
| T |
40613366 |
gaaccttgatactttctgcgcatggcatcccaaatatcctttgctgaatctttaaccataatggtttctatgatttttctatcaatggattgaaaaagat |
40613465 |
T |
|
| Q |
485 |
agtttttcacctt |
497 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
40613466 |
agttttttacctt |
40613478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 111 - 365
Target Start/End: Complemental strand, 3037497 - 3037246
Alignment:
| Q |
111 |
acttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgt |
210 |
Q |
| |
|
||||| ||| |||||||| | | ||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||||| | |
|
|
| T |
3037497 |
acttgtttgtgtgttttcgtcagcattcaagttccatccttgtgattcttcaaatataacatccctgctaatcaaaactttcttgctcttaggatcatat |
3037398 |
T |
|
| Q |
211 |
agcttataagcttttgattcttcactcaaaccaagcagaatacacctagtactactcttatcatctaacttcttcctctgagagtatgacacatgaacat |
310 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | | ||||||| ||| ||||||||||||| ||||||| |||||||| | | | ||||| || |
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|
| T |
3037397 |
agcttgtaagcttttgattcttcacttaaacctaaaaaaatacacttag---tactcttatcatccaacttctctctctgagaatctaaaacatgtgaat |
3037301 |
T |
|
| Q |
311 |
aagaaatacatcccaaaattctaaaatactttactgaaggttgcacaccactcca |
365 |
Q |
| |
|
| | ||||||||| || | |||||||| | |||||||||| |||||||||||| |
|
|
| T |
3037300 |
atgcaatacatccaaatactctaaaatgatgcactgaaggtttcacaccactcca |
3037246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 467
Target Start/End: Complemental strand, 3036256 - 3036173
Alignment:
| Q |
386 |
aaccttgatacttcctacgcattgtatcccaaatatcct--tagctgaatatttaaccaatatagtttccatgattgttctatc |
467 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||| ||| ||||| ||||||||| | ||||||||| ||||||||| |
|
|
| T |
3036256 |
aaccttgatatttcctacacattgcatcccaaatatccttatagttgaatctttaaccaagaatgtttccatggctgttctatc |
3036173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 385 - 498
Target Start/End: Complemental strand, 17535465 - 17535352
Alignment:
| Q |
385 |
gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat |
484 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| || || |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
17535465 |
gaaccttgatactttctacgcattgcctcccaaatatccttagatgaatctttaactaaaatggtttccatgattgttctatcgatggattgaaaaagat |
17535366 |
T |
|
| Q |
485 |
agtttttcacctta |
498 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
17535365 |
agttctttacctta |
17535352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 385 - 488
Target Start/End: Complemental strand, 28106802 - 28106699
Alignment:
| Q |
385 |
gaaccttgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagat |
484 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| |||||| || ||||||| ||| |||||||| || ||||||||||||||||||||||||||||||| | |
|
|
| T |
28106802 |
gaaccttgatgcttcctacgcatagcatcccgaatatcattggctgaatttttgaccaatattattaccatgattgttctatcaatggattgaaagaggt |
28106703 |
T |
|
| Q |
485 |
agtt |
488 |
Q |
| |
|
|||| |
|
|
| T |
28106702 |
agtt |
28106699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 391 - 498
Target Start/End: Complemental strand, 20528622 - 20528517
Alignment:
| Q |
391 |
tgatacttcctacgcattgtatcccaaatatccttagctgaatatttaaccaatatagtttccatgattgttctatcaatggattgaaagagatagtttt |
490 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||| | ||| | ||||| |||||||||||||||||||| ||||||||||| | |
|
|
| T |
20528622 |
tgatacttcctacgcattgcatcccaaatatccttagctgaatctttgatcaagtttctttccttgattgttctatcaatggat--gaagagatagttct |
20528525 |
T |
|
| Q |
491 |
tcacctta |
498 |
Q |
| |
|
|||||||| |
|
|
| T |
20528524 |
tcacctta |
20528517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 20530581 - 20530357
Alignment:
| Q |
12 |
attctcatttatatcatcaagaggaggcatctcaggatcaatttgatttattggctcatcagttgtgaattctataacatcatcatcaattagtgttgaa |
111 |
Q |
| |
|
||||||| ||||||| ||||| |||||||| |||||| | || ||| | |||| ||||| ||||||| ||||| ||||||||||||| |||| || | |
|
|
| T |
20530581 |
attctcacttatatcttcaagcttaggcatcttaggatctacttcattcactggcacatcatttgtgaactctatcacatcatcatcaactagtatttta |
20530482 |
T |
|
| Q |
112 |
cttgattgagtgttttcattatcattccagttccatccttgtgattcttcaaatataacatccctggtaatcaccactttcttattgttaggatcatgta |
211 |
Q |
| |
|
|||| || | |||| | ||||||||||||| |||||||||||||| ||||| ||||| | | ||||| | |||||| | ||||| |||| || |
|
|
| T |
20530481 |
cttgcttatgagtttgttgcagcattccagttccaaccttgtgattcttccaatatgacatctttacttatcacaagtttcttgcttttagggtcatata |
20530382 |
T |
|
| Q |
212 |
gcttataagcttttgattcttcact |
236 |
Q |
| |
|
||||||||||||| |||| |||||| |
|
|
| T |
20530381 |
gcttataagctttagattattcact |
20530357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 45341855 - 45341806
Alignment:
| Q |
445 |
atagtttccatgattgttctatcaatggattgaaagagatagtttttcac |
494 |
Q |
| |
|
||||| |||||||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
45341855 |
atagtctccatgatgtttctttcaatggactgaaagagatagtttttcac |
45341806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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